Browse Element(s) Details


Os.21592.1.S1_at

Description gb:AK065419.1
DB_XREF= gi:32975437
TID=Os.21592.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21592 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1714_H10.10 (OJ1714_H10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full insert sequence.
FL= gb:AK065419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0655010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06510Os.20602.2.S1_x_at11/117+3156193..3158373hAT family dimerisation domain containing protein
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein
LOC_Os07g06590Os.12274.1.S1_at10/117+3197066..3200109ML domain protein, putative, expressed
LOC_Os07g06600Os.18418.1.S1_at11/117+3201368..3202492Glutaredoxin family protein, expressed
LOC_Os07g06610OsAffx.32032.4.S1_s_at11/117+3205422..3212293ubiquitin-specific protease, putative, expressed
LOC_Os07g06610Os.45946.1.S1_at7/117+3205422..3212293ubiquitin-specific protease, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21592.1.S1_at--1121--3211Chr07:3181989..3182013 (25 bp)
CAAGTCTGGCAATTGCAGTGACACT
LOC_Os07g06550
Os.21592.1.S1_at--607--2851Chr07:3181988..3182012 (25 bp)
AAGTCTGGCAATTGCAGTGACACTG
LOC_Os07g06550
Os.21592.1.S1_at--177--5511Chr07:3181859..3181883 (25 bp)
GAAAATTTGTGTCTATACCAGTATC
LOC_Os07g06550
Os.21592.1.S1_at--1134--2231Chr07:3181857..3181881 (25 bp)
AAATTTGTGTCTATACCAGTATCTC
LOC_Os07g06550
Os.21592.1.S1_at--341--10251Chr07:3181854..3181878 (25 bp)
TTTGTGTCTATACCAGTATCTCTGT
LOC_Os07g06550
Os.21592.1.S1_at--795--7451Chr07:3181851..3181875 (25 bp)
GTGTCTATACCAGTATCTCTGTATG
LOC_Os07g06550
Os.21592.1.S1_at--822--7151Chr07:3181849..3181873 (25 bp)
GTCTATACCAGTATCTCTGTATGTT
LOC_Os07g06550
Os.21592.1.S1_at--669--3691Chr07:3181847..3181871 (25 bp)
CTATACCAGTATCTCTGTATGTTTG
LOC_Os07g06550
Os.21592.1.S1_at--676--10311Chr07:3181654..3181678 (25 bp)
TTTCTGCTATTTTACCAATCATCAT
LOC_Os07g06550
Os.21592.1.S1_at--229--9491Chr07:3181652..3181676 (25 bp)
TCTGCTATTTTACCAATCATCATTG
LOC_Os07g06550
Os.21592.1.S1_at--522--9991Chr07:3181642..3181666 (25 bp)
TACCAATCATCATTGTACTGTGTGT
NONE
Target Sequence 
CAAGTCTGGCAATTGCAGTGACACTGAGGGCAAGGCATGGGATCCGCTCGCGATGAAGATGGCTGGACGGGCTTNTGGTG
GCGTTNCTGCACCAACACCAAGCATGTGTTTNTGATTGTTCATTGCTTTTGAAAATTTGTGTCTATACCAGTATCTCTGT
ATGTTTGAGAGTTGATATTGAGTCTATTTTTATCTTGTGATGTAATTGCCTTTCCTTGCCCCTNAGAANTATCCGTTTGT
TTGTGGGGTGAGGCAAGTGGAATAAGAGTGCTGCAGTTNTGCAGTTAAGCTTGCCAGTTCTGCAGTTCATGCATCTGTAA
TTTGATGCTGCAGGATTTCTGCTATTTTACCAATCATCATTGTACTGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis