Browse Element(s) Details

Os.21839.1.S1_at

Description

gb:AK070299.1
DB_XREF= gi:32980323
TID=Os.21839.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-303-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047F19, full insert sequence.
FL= gb:AK070299.1 gb:AK098967.1 gb:AK109351.2 gb:AK109407.2
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g11130	9/11	2-Hydroxyisoflavanone dehydratase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g11070	Os.23461.1.A1_at	11/11	6	+	5806277..5810130	expressed protein
LOC_Os06g11070	OsAffx.4796.1.S1_s_at	11/11	6	+	5806277..5810130	expressed protein
LOC_Os06g11080	OsAffx.4797.1.S1_at	11/11	6	+	5811592..5812001	hypothetical protein
LOC_Os06g11090	Os.49572.1.A1_at	11/11	6	+	5812498..5814197	esterase, putative, expressed
LOC_Os06g11100	OsAffx.22063.1.S1_at	1/11	6	+	5816259..5819852	retrotransposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.20729.1.S1_x_at	4/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_x_at	2/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.3.S1_x_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.2022.1.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11110	OsAffx.21171.4.S1_at	1/11	6	+	5820541..5826468	transposon protein, putative, unclassified
LOC_Os06g11120	OsAffx.4798.1.S1_x_at	10/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.24637.2.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	OsAffx.13605.1.S1_x_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11120	Os.50619.1.S1_at	1/11	6	+	5829907..5832224	hypothetical protein
LOC_Os06g11130	Os.21839.1.S1_at	9/11	6	+	5834563..5836107	2-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os06g11140	Os.49084.1.S1_at	10/11	6	+	5839159..5843518	NADH dehydrogenase, putative, expressed
LOC_Os06g11150	NA	NA	6	+	5847361..5848608	hypothetical protein
LOC_Os06g11160	OsAffx.27668.1.S1_at	1/11	6	+	5853314..5853670	hypothetical protein
LOC_Os06g11170	Os.10676.1.S1_a_at	11/11	6	+	5856427..5860126	U1 zinc finger family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.21839.1.S1_at--748--755	1	Chr06:5835590..5835614 (25 bp)	GGGCCACGTCTTCTACTGCATGGAT	LOC_Os06g11130
Os.21839.1.S1_at--610--991	1	Chr06:5835603..5835627 (25 bp)	TACTGCATGGATCCGCGCTGCGAGA	LOC_Os06g11130
Os.21839.1.S1_at--582--411	1	Chr06:5835690..5835714 (25 bp)	CGAAGGCTTCGCCATGATGGAATAA	LOC_Os06g11130
Os.21839.1.S1_at--283--975	1	Chr06:5835712..5835736 (25 bp)	TAATTCTGGCGCTTTGTGATGCCGC	LOC_Os06g11130
Os.21839.1.S1_at--502--159	1	Chr06:5835745..5835769 (25 bp)	AGCTCGAGGGCTCCTGTAGCTTGTC	LOC_Os06g11130
Os.21839.1.S1_at--1102--905	1	NONE	TGCATTTTGCACCAGTACAACGCAC	NONE
Os.21839.1.S1_at--12--509	1	NONE	GCACCAGTACAACGCACATATTTAG	NONE
Os.21839.1.S1_at--28--17	1	Chr06:5835930..5835954 (25 bp)	ATTTTCACTTTACACTGGGTTGTAT	LOC_Os06g11130
Os.21839.1.S1_at--82--799	1	Chr06:5836038..5836062 (25 bp)	GGATGTACTACACTTGTTACAAAGC	LOC_Os06g11130
Os.21839.1.S1_at--235--279	1	Chr06:5836068..5836092 (25 bp)	AAGATACACTCTACCTAGTGCAAAG	LOC_Os06g11130
Os.21839.1.S1_at--874--429	1	Chr06:5836081..5836105 (25 bp)	CCTAGTGCAAAGTGTAATTTACCCA	LOC_Os06g11130

Target Sequence

GGGCCACGTCTTCTACTGCATGGATCCGCGCTGCGAGAGAGCGCGGGAGATGCAGGCGCGCATCCTCAGCTTCCTCCGCA
AGTGAAGCTCCTCCACGACGCGAAGGCTTCGCCATGATGGAATAATTCTGGCGCTTTGTGATGCCGCCATTGTTGAGCTC
GAGGGCTCCTGTAGCTTGTCGCTCGTCAGTTCAGGCATCTTTTGTGCCAATTGACGATCTTATTCTTCAAGAGTTGGAAA
TCATCGAACAAATTGGAAATTTCTATTCGAATCATCAATCAGTTATCATATAAGAATAAGTTGCATTTTGCACCAGTACA
ACGCACATATTTAGCAAATAATTTTCACTTTACACTGGGTTGTATTAAAATAAGTTCCATTTAACATCATGGTATATCAA
CAAACAATAGGATGCAACATAGTGCAAAGTGAAATCTTGATGTAAAATGGATGTACTACACTTGTTACAAAGCAAAACAA
GATACACTCTACCTAGTGCAAAGTGTAATTTACCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis