Browse Element(s) Details


Os.22513.1.S1_a_at

Description gb:AK070420.1
DB_XREF= gi:32980444
TID=Os.22513.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.22513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0401G10.10 (P0401G10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048A15, full insert sequence.
FL= gb:AK070420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7289011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72834Os.6252.1.S1_at11/111+42574660..42582121RNA recognition motif, putative, expressed
LOC_Os01g72850OsAffx.24018.1.S1_at11/111+42582503..42584038GDSL-motif lipase/hydrolase family protein, putative
LOC_Os01g72860Os.19279.2.S1_x_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72860Os.19279.1.S1_at11/111+42587177..42591744MAC/Perforin domain containing protein, expressed
LOC_Os01g72870OsAffx.9748.1.S1_x_at11/111+42591871..42595298expressed protein
LOC_Os01g72870Os.48288.1.S1_at11/111+42591871..42595298expressed protein
LOC_Os01g72870OsAffx.9748.1.S1_at10/111+42591871..42595298expressed protein
LOC_Os01g72880Os.10900.1.S1_at11/111+42595750..42601761DNA mismatch repair protein MutL containing protein, expressed
LOC_Os01g72890Os.22513.1.S1_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.1.S1_a_at11/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890Os.22513.2.S1_x_at8/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72890OsAffx.24019.1.S1_x_at7/111+42602391..42607412retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g72900Os.27963.1.A1_at11/111+42608122..42608821ABA/WDS induced protein, expressed
LOC_Os01g72910Os.7372.1.S1_at11/111+42609680..42610468ABA/WDS induced protein, expressed
LOC_Os01g72920NANA1+42615321..42616454hypothetical protein
LOC_Os01g72930Os.43014.1.S1_at11/111+42624107..42626907pentatricopeptide, putative, expressed
LOC_Os01g72940Os.43012.1.A1_at11/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed
LOC_Os01g72940OsAffx.13130.1.S1_at1/111+42630356..42638025Phosphatidylserine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22513.1.S1_a_at--1148--3111Chr01:42606298..42606415 (25 bp)
AATTTCTCCTCGAACCAGGCGAGGA
LOC_Os01g72890
Os.22513.1.S1_a_at--227--5431Chr01:42606406..42606426 (21 bp)
GAACCAGGCGAGGACCTCCATTGAG
LOC_Os01g72890
Os.22513.1.S1_a_at--610--3451Chr01:42606406..42606430 (25 bp)
CAGGCGAGGACCTCCATTGAGGCGT
LOC_Os01g72890
Os.22513.1.S1_a_at--252--4071Chr01:42606410..42606434 (25 bp)
CGAGGACCTCCATTGAGGCGTGGAA
LOC_Os01g72890
Os.22513.1.S1_a_at--958--8871Chr01:42606423..42606447 (25 bp)
TGAGGCGTGGAAGGTCTGATTCATC
LOC_Os01g72890
Os.22513.1.S1_a_at--422--4671Chr01:42606427..42606451 (25 bp)
GCGTGGAAGGTCTGATTCATCGTAT
LOC_Os01g72890
Os.22513.1.S1_a_at--567--5311Chr01:42606432..42606456 (25 bp)
GAAGGTCTGATTCATCGTATTCTCG
LOC_Os01g72890
Os.22513.1.S1_a_at--441--7811Chr01:42606435..42606459 (25 bp)
GGTCTGATTCATCGTATTCTCGATC
LOC_Os01g72890
Os.22513.1.S1_a_at--342--6571Chr01:42606440..42606464 (25 bp)
GATTCATCGTATTCTCGATCACCCA
LOC_Os01g72890
Os.22513.1.S1_a_at--1088--10511Chr01:42606442..42606466 (25 bp)
TTCATCGTATTCTCGATCACCCAGT
LOC_Os01g72890
Os.22513.1.S1_a_at--589--9391Chr01:42606454..42606478 (25 bp)
TCGATCACCCAGTCCTCCAAGAAAG
LOC_Os01g72890
Target Sequence 
AATTTCTCCTCGAACCAGGCGAGGACCTCCATTGAGGCGTGGAAGGTCTGATTCATCGTATTCTCGATCACCCAGTCCTC
CAAGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22513.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis