Browse Element(s) Details


Os.22559.1.S1_at

Description gb:AK071565.1
DB_XREF= gi:32981588
TID=Os.22559.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.12 (P0434A03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101O16, full insert sequence.
FL= gb:AK071565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2964011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29600Os.26381.1.S1_x_at11/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29600Os.26381.5.S1_at1/117+17398177..17401360Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g29610Os.12013.3.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_at11/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29610Os.12013.1.S1_a_at9/117+17402765..17408085Mannose-P-dolichol utilization defect 1 protein homolog, putative, expressed
LOC_Os07g29620Os.137.1.S1_at11/117+17408334..17412155Serine carboxypeptidase-like precursor, putative, expressed
LOC_Os07g29630Os.28775.1.S1_at11/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.57183.1.S1_at10/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29630Os.51700.1.S1_at1/117+17419609..17423757SNF7 family protein, expressed
LOC_Os07g29640Os.22559.1.S1_at11/117+17424704..17427721expressed protein
LOC_Os07g29640Os.38994.1.A1_at11/117+17424704..17427721expressed protein
LOC_Os07g29650Os.35344.3.S1_x_at7/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650Os.35344.18.S1_x_at6/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29650OsAffx.22940.5.S1_x_at3/117+17429556..17432042transposon protein, putative, Mutator sub-class
LOC_Os07g29660OsAffx.22317.1.S1_at11/117+17437850..17438140hypothetical protein
LOC_Os07g29670NANA7+17438877..17442520hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_x_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.16479.1.S1_at11/117+17443413..17448062hypothetical protein
LOC_Os07g29684OsAffx.28662.1.S1_at10/117+17443413..17448062hypothetical protein
LOC_Os07g29700Os.10046.1.S1_at11/117+17452353..17453549hypothetical protein
LOC_Os07g29700OsAffx.10906.1.S1_at11/117+17452353..17453549hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22559.1.S1_at--104--7831Chr07:17425949..17425973 (25 bp)
GGTAATTTGAGCAAGTCCCAGCCAC
LOC_Os07g29640
Os.22559.1.S1_at--55--7251Chr07:17425935..17425959 (25 bp)
GTCCCAGCCACTTCCAGATTATAAA
LOC_Os07g29640
Os.22559.1.S1_at--943--9451Chr07:17425901..17425925 (25 bp)
TCTGTAAGAAAGAAGCCTCGCCATT
LOC_Os07g29640
Os.22559.1.S1_at--130--5431Chr07:17425890..17425914 (25 bp)
GAAGCCTCGCCATTTATCTATTGGA
LOC_Os07g29640
Os.22559.1.S1_at--1007--8211Chr07:17425858..17425882 (25 bp)
GGCAATGCTCATCAGGCCTAGAAGC
LOC_Os07g29640
Os.22559.1.S1_at--288--3191Chr07:17425824..17425848 (25 bp)
CAATGTTAGTGTATCCGTGTCCCTT
LOC_Os07g29640
Os.22559.1.S1_at--448--5231Chr07:17425794..17425818 (25 bp)
GAATATATCATCACTTCCCAACTCT
LOC_Os07g29640
Os.22559.1.S1_at--232--3311Chr07:17425783..17425807 (25 bp)
CACTTCCCAACTCTATCATCAATGA
LOC_Os07g29640
Os.22559.1.S1_at--728--2811Chr07:17425748..17425771 (24 bp)
AAGATACCTCATTCATCAACCATGC
LOC_Os07g29640
Os.22559.1.S1_at--1137--3571Chr07:17425638..17425762 (25 bp)
CATTCATCAACCATGCGGCTATAGC
LOC_Os07g29640
Os.22559.1.S1_at--281--5571Chr07:17425574..17425598 (25 bp)
GAAAGTTCCTAAAGAGGCATCACAA
LOC_Os07g29640
Target Sequence 
GGTAATTTGAGCAAGTCCCAGCCACTTCCAGATTATAAACCAAAAACATCTGTAAGAAAGAAGCCTCGCCATTTATCTAT
TGGAAAAAGAAGGCAATGCTCATCAGGCCTAGAAGCAATGGAGAACAATGTTAGTGTATCCGTGTCCCTTGAGGGGAATA
TATCATCACTTCCCAACTCTATCATCAATGATTCTAATGGGAAAGATACCTCATTCATCAACCATGCGGCTATAGCATGG
GCCGAGATGAGAAGGCAATGGACCGGAGACCAGGAGAAAGTTCCTAAAGAGGCATCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis