Browse Element(s) Details


Os.22638.1.S1_x_at

Description gb:AK106050.1
DB_XREF= gi:32991259
TID=Os.22638.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.22638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F01, full insert sequence.
FL= gb:AK106050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1845411/11Gamma interferon inducible lysosomal thiol reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18420Os.12828.1.S1_at10/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18420Os.52574.2.S1_x_at1/113+10304006..10309625CHCH domain containing protein, expressed
LOC_Os03g18430Os.32994.1.S1_at10/113+10312319..10315974protein kinase family protein, putative, expressed
LOC_Os03g18440Os.7261.1.S1_at11/113+10324018..10334636expressed protein
LOC_Os03g18454Os.22638.1.S1_x_at11/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18454Os.12546.1.S1_at9/113+10333654..10338327Gamma interferon inducible lysosomal thiol reductase family protein, expressed
LOC_Os03g18470OsAffx.12919.1.S1_at11/113+10338878..10340482expressed protein
LOC_Os03g18480OsAffx.28970.2.S1_at11/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.4.S1_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18480OsAffx.28970.3.S1_x_at1/113+10342028..10344295Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g18490OsAffx.12920.1.S1_at11/113+10346030..10347121expressed protein
LOC_Os03g18500Os.24774.1.S1_at11/113+10347920..10351635Mitochondrial import inner membrane translocase subunit Tim17 family protein, expressed
LOC_Os03g18510Os.11646.1.S1_at10/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18510Os.9230.1.S1_x_at1/113+10351843..10355069Eukaryotic translation initiation factor 2 alpha subunit family protein, expressed
LOC_Os03g18520NANA3+10355716..10358422Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g18530Os.56051.1.S1_at11/113+10359121..10359795ECA1 protein, putative, expressed
LOC_Os03g18540Os.18166.1.S1_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.18166.1.S2_at11/113+10360389..10366633expressed protein
LOC_Os03g18540Os.51413.1.S1_at1/113+10360389..10366633expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22638.1.S1_x_at--1076--6811Chr03:10335616..10335640 (25 bp)
GTTTCATCTACTGCGTGGAGGACCT
LOC_Os03g18454
Os.22638.1.S1_x_at--1036--3251Chr03:10335575..10335599 (25 bp)
CAACGGGAGTGGGAATCCTGCTTCG
LOC_Os03g18454
Os.22638.1.S1_x_at--113--8731Chr03:10335525..10335549 (25 bp)
TGTCACCGACTGCTACAAGGGCGAA
LOC_Os03g18454
Os.22638.1.S1_x_at--133--7111Chr03:10334959..10335269 (25 bp)
GTCAGCCGCTCTACGAGGATTACGA
LOC_Os03g18454
Os.22638.1.S1_x_at--546--2211Chr03:10335034..10335058 (25 bp)
ACAAGGGCCATCCTCCCAAGGTGTG
LOC_Os03g18454
Os.22638.1.S1_x_at--94--5731Chr03:10334988..10335012 (25 bp)
GACTCCGACTGTGCTTGAGGTAGCG
LOC_Os03g18454
Os.22638.1.S1_x_at--324--7111Chr03:10334948..10334972 (25 bp)
GTCAGCTATTACGACTCCGGTGATA
LOC_Os03g18454
Os.22638.1.S1_x_at--949--1851Chr03:10334938..10334962 (25 bp)
ACGACTCCGGTGATATCAGGCTTAA
LOC_Os03g18454
Os.22638.1.S1_x_at--786--871Chr03:10334902..10334926 (25 bp)
ATGGCCACGCCAAGATCAAGAAGGT
LOC_Os03g18454
Os.22638.1.S1_x_at--266--1151Chr03:10334827..10334851 (25 bp)
AGTCCCATGTTTCTGTCTAGGCTAT
LOC_Os03g18454
Os.22638.1.S1_x_at--400--8311Chr03:10334808..10334832 (25 bp)
GGCTATAGGACATAGTTCATCCAGT
LOC_Os03g18454
Target Sequence 
GTTTCATCTACTGCGTGGAGGACCTNGTNGTGAACCACAAGCAACGGGAGTGGGAATCCTGCTTCGGGNAAGCTCAACCN
TCGANTCCCAAGCCTGTCACCGACTGCTACAAGGGCGAACGNGGCCANCCANCTNTNGNCTCAAGTATNGAANGACAGAC
TGACGCTTTGCAGCCTCCCCACAAGTACGTTCCCTGGGNTGGTCGTCGACGGTCAGCCGCTCTACGAGGATTACGAGAAN
TTCGAGGCTTACATNTGCAAGGCCTACAAGGGCCATCCTCCCAAGGTGTGCGAGGGGCTGGCCCGTCCTCCGACTCCGAC
TGTGCTTGAGGTAGCGGAGGCAGNCAATAGAGTCAGCTATTACGACTCCGGTGATATCAGGCTTAAGCCTGATGAAGATG
GCCACGCCAAGATCAAGAAGGTGGTTCCAGATGATGATGATTGAATGATGGGGGGAAGATATCAACANAGGCAGTCCCAT
GTTTCTGTCTAGGCTATAGGACATAGTTCATCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22638.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis