Browse Element(s) Details


Os.22915.1.S1_at

Description gb:AK109549.1
DB_XREF= gi:32994758
TID=Os.22915.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-G08, full insert sequence.
FL= gb:AK109549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3804011/11Nudix hydrolase 23, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37990OsAffx.18041.1.S1_at8/119+21898382..21899005hypothetical protein
LOC_Os09g38000OsAffx.30184.1.S1_at10/119+21902233..21904578no apical meristem family protein, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_at11/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38010OsAffx.30185.1.S1_s_at10/119+21907157..21909723NAC-domain containing protein 78, putative, expressed
LOC_Os09g38020NANA9+21911482..21912192Histone H4, putative, expressed
LOC_Os09g38030Os.10118.1.S1_at11/119+21916843..21921942UTP-glucose-1-phosphate uridylyltransferase, putative, expressed
LOC_Os09g38040Os.22915.1.S1_at11/119+21922408..21925576Nudix hydrolase 23, chloroplast precursor, putative, expressed
LOC_Os09g38050NANA9+21928150..21928746hypothetical protein
LOC_Os09g38060Os.12226.1.S1_at11/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38060Os.17740.1.S1_x_at1/119+21930534..21934430nicotinate-nucleotide pyrophosphorylase family protein, expressed
LOC_Os09g38070Os.19310.1.S1_at11/119+21936500..21938069expressed protein
LOC_Os09g38080Os.48912.1.S1_at11/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38080Os.47130.4.A1_x_at3/119+21941524..21944947retrotransposon protein, putative, unclassified, expressed
LOC_Os09g38090Os.11602.1.S1_at11/119+21945461..21948530expressed protein
LOC_Os09g38100OsAffx.18042.1.S1_at11/119+21948982..21951711Mitochondrial carrier protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22915.1.S1_at--57--5291Chr09:21923407..21923431 (25 bp)
GAATGTGCACTTTTTGCCTTGGATG
LOC_Os09g38040
Os.22915.1.S1_at--921--5671Chr09:21923383..21923407 (25 bp)
GACATACCATTTGATTCTCTAGCAT
LOC_Os09g38040
Os.22915.1.S1_at--622--4951Chr09:21923362..21923386 (25 bp)
GCATTTTCTTCGATCATTGTCACCT
LOC_Os09g38040
Os.22915.1.S1_at--117--5471Chr09:21922832..21922856 (25 bp)
GAACTGGTGCTTCAGATCTTCGCAG
LOC_Os09g38040
Os.22915.1.S1_at--319--6511Chr09:21922803..21922827 (25 bp)
GATATTGACAACCACTTGGCTGTGT
LOC_Os09g38040
Os.22915.1.S1_at--931--1151Chr09:21922768..21922792 (25 bp)
AGTCTGGTGACTAATCATGTTGCAT
LOC_Os09g38040
Os.22915.1.S1_at--625--2151Chr09:21922703..21922727 (25 bp)
ACAGCGATCGCATCGGTCATGGATT
LOC_Os09g38040
Os.22915.1.S1_at--800--7171Chr09:21922668..21922692 (25 bp)
GTCTGAGTGTCGAATCTCTGTTCAA
LOC_Os09g38040
Os.22915.1.S1_at--1024--8271Chr09:21922634..21922658 (25 bp)
GGCATCTCGCCACACTGGAATAGAT
LOC_Os09g38040
Os.22915.1.S1_at--787--3611Chr09:21922471..21922495 (25 bp)
CTTGGATTGAGTGATCCTGCGCGAT
LOC_Os09g38040
Os.22915.1.S1_at--129--8011Chr09:21922444..21922468 (25 bp)
GGATGGTTTATTCCAGTTGCAAAGC
LOC_Os09g38040
Target Sequence 
GAATGTGCACTTTTTGCCTTGGATGACATACCATTTGATTCTCTAGCATTTTCTTCGATCATTGTCACCTTGAGGATGTA
TCTTGAAGATGTCAAGTCCGGAAATATCAAATTCCACTACTGCACTATAAACAAAAGGATAGGAACTGGTGCTTCAGATC
TTCGCAGTTTTGATATTGACAACCACTTGGCTGTGTGAACTTGAGAAGTCTGGTGACTAATCATGTTGCATGATGAGATT
AATTTCGGGATATACAGCAGTCATAATCAACACAGCGATCGCATCGGTCATGGATTTGGAACTGTTGTCTGAGTGTCGAA
TCTCTGTTCAAGCCTTGCNTGGCATCTCGCCACACTGGAATAGATTNTAGGCGCTGGAATTGTAAATGTTCGGTTTCTTG
AAGTGTTTATTTTAGCCTTCTAGAGATGTTGCTTTTTTTTTCTTTTTCAATTTTTGTGGAAGGACCAGAGGTTGTAACGT
GGCATNTNNNGGGAATTTCACAGCTTGGATTGAGTGATCCTGCGCGATGTGGATGGTTTATTCCAGTTGCAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis