Browse Element(s) Details


Os.23048.1.S1_at

Description gb:AK062904.1
DB_XREF= gi:32972922
TID=Os.23048.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F08, full insert sequence.
FL= gb:AK062904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0650011/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06430Os.7750.1.S1_at11/112+3212390..3216632expressed protein
LOC_Os02g06440OsAffx.11917.1.S1_x_at9/112+3216940..3217809hypothetical protein
LOC_Os02g06440OsAffx.11917.1.S1_at8/112+3216940..3217809hypothetical protein
LOC_Os02g06450OsAffx.2521.1.S1_at11/112+3219169..3219516hypothetical protein
LOC_Os02g06460Os.49520.1.A1_at5/112+3220489..3225189hypothetical protein
LOC_Os02g06460Os.8872.1.S1_at1/112+3220489..3225189hypothetical protein
LOC_Os02g06480Os.8872.1.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.3.S1_at11/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.8872.1.S2_at10/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480Os.10300.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06480OsAffx.1884.1.S1_x_at1/112+3227568..3233932SCO1/SenC family protein, expressed
LOC_Os02g06470Os.8872.2.S1_at11/112+3227679..3229222F-box domain containing protein, expressed
LOC_Os02g06490OsAffx.24131.1.S1_at10/112+3234378..3237519Vacuolar protein sorting-associated protein VPS4, putative
LOC_Os02g06500Os.23048.1.S1_at11/112+3237584..3249730DEAD/DEAH box helicase, putative, expressed
LOC_Os02g06510OsAffx.11918.1.S1_s_at11/112+3251639..3252390myosin heavy chain, putative, expressed
LOC_Os02g06520Os.18079.1.S1_at11/112+3254923..3256937F-box domain containing protein, expressed
LOC_Os02g06530OsAffx.11919.1.S1_s_at11/112+3263666..3265602Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os02g06540Os.50048.1.S1_at11/112+3266009..3268698Sugar carrier protein C, putative, expressed
LOC_Os02g06550NANA2+3270601..3271272retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0010093biological_processspecification of floral organ identity
GO:0016070biological_processRNA metabolism
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23048.1.S1_at--910--6751Chr02:3238202..3238226 (25 bp)
GTTCAAGGTGCCTGTAGATCCCGAG
LOC_Os02g06500
Os.23048.1.S1_at--123--1291Chr02:3238187..3238211 (25 bp)
AGATCCCGAGGAATATGCCCGTGAT
LOC_Os02g06500
Os.23048.1.S1_at--655--6711Chr02:3238154..3238178 (25 bp)
GTTCGGTCTTGTTGAAGTCGTCTAC
LOC_Os02g06500
Os.23048.1.S1_at--119--8111Chr02:3238036..3238060 (25 bp)
GGACCCCATTTGCAGACATCTGTGA
LOC_Os02g06500
Os.23048.1.S1_at--996--7611Chr02:3237920..3237944 (25 bp)
GGGAACTCCGCGTTGCATAAGAAAA
LOC_Os02g06500
Os.23048.1.S1_at--1118--5971Chr02:3237893..3237917 (25 bp)
GAGACTGCGTCCAATGCCATTAAGC
LOC_Os02g06500
Os.23048.1.S1_at--1121--2671Chr02:3237872..3237896 (25 bp)
AAGCGTGACATCGTCTTTGCAGCAA
LOC_Os02g06500
Os.23048.1.S1_at--807--9531Chr02:3237794..3237818 (25 bp)
TCTAGGCCCGTGATGTTTGTAAGTA
LOC_Os02g06500
Os.23048.1.S1_at--862--691Chr02:3237705..3237729 (25 bp)
ATGAGCAACTCTGCATTACCAGGCA
LOC_Os02g06500
Os.23048.1.S1_at--86--7511Chr02:3237661..3237685 (25 bp)
GTGGTAGCATCTCACAGCACTGATA
LOC_Os02g06500
Os.23048.1.S1_at--1019--2531Chr02:3237589..3237613 (25 bp)
AACTAATCCTGATGCGAGTGCGCAC
LOC_Os02g06500
Target Sequence 
GTTCAAGGTGCCTGTAGATCCCGAGGAATATGCCCGTGATAATCTCAAGTTCGGTCTTGTTGAAGTCGTCTACGAATGGG
CAAAGGGGACCCCATTTGCAGACATCTGTGAGCTGACAGATGTATCTGAAGGTCTCATTGTAAGAACAATCGTGCGGTTG
GATGAAACTTGCAGGGAGTTCAGGAATGCAGCTTCCATAATGGGGAACTCCGCGTTGCATAAGAAAATGGAGACTGCGTC
CAATGCCATTAAGCGTGACATCGTCTTTGCAGCAAGCTTGTATGTCACAGGGATATGATGCATTTAAACATGCATCCTAA
ATCCTAAATCTAGGCCCGTGATGTTTGTAAGTAGAGAAATTTCATTTCTGGCTGGCAAATTTATGGGCAATCCCAGCCTT
TAACACTGTAACAGTCCATGAGCAACTCTGCATTACCAGGCAGATAGGAAATTATATGGACGTGGTAGCATCTCACAGCA
CTGATACCATGCAAAGAAAGATTGCCCATGCAAGACTTTGTATCAGATCATTCAACTAATCCTGATGCGAGTGCGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis