Browse Element(s) Details


Os.23127.1.S1_s_at

Description gb:CA998407
DB_XREF= gi:27554507
DB_XREF=S345D_H11
TID=Os.23127.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.23127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) S-adenosylmethionine:2-demethylmenaquinone methyltransferase-like protein (P0690B02.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5246011/11protein of unknown function, TIGR01935 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52410OsAffx.2312.1.S1_at11/111+30444067..30445393Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g52420OsAffx.2313.1.S1_at11/111+30446858..30447088hypothetical protein
LOC_Os01g52430Os.40626.2.S1_x_at6/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430Os.40626.1.S1_at5/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52430OsAffx.23764.1.S1_at1/111+30451798..30455596hAT family dimerisation domain containing protein
LOC_Os01g52440OsAffx.23764.1.S1_at11/111+30457211..30457732hypothetical protein
LOC_Os01g52450Os.41826.1.S1_x_at10/111+30458236..30462095Hexokinase 2, putative, expressed
LOC_Os01g52460Os.23127.1.S1_s_at11/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52460OsAffx.7779.1.S1_at6/111+30463938..30469516protein of unknown function, TIGR01935 containing protein, expressed
LOC_Os01g52470Os.32865.1.S1_at11/111+30470494..30473674Elongation factor 2, putative, expressed
LOC_Os01g52480Os.50867.1.S1_at11/111+30482512..30484489senescence/dehydration-associated protein, putative, expressed
LOC_Os01g52490Os.12357.1.S1_at11/111+30484794..3048662140S ribosomal protein S24, putative, expressed
LOC_Os01g52500Os.421.1.S1_a_at11/111+30492864..30498505NADP-dependent malic enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23127.1.S1_s_at--1133--9611Chr01:30464129..30464153 (25 bp)
TCATGGAAGGGTTCTCGTGGTTGAT
LOC_Os01g52460
Os.23127.1.S1_s_at--799--5911Chr01:30464162..30464186 (25 bp)
GAGCTTGCGCTGTGCCATTTTGGGT
LOC_Os01g52460
Os.23127.1.S1_s_at--158--8611Chr01:30464282..30464306 (25 bp)
TGGTGTCCGGGCTCTGAACTCACAT
LOC_Os01g52460
Os.23127.1.S1_s_at--12--8331Chr01:30464291..30464315 (25 bp)
GGCTCTGAACTCACATCCTATGAAG
LOC_Os01g52460
Os.23127.1.S1_s_at--164--3771Chr01:30464293..30464317 (25 bp)
CTCTGAACTCACATCCTATGAAGGC
LOC_Os01g52460
Os.23127.1.S1_s_at--515--10711Chr01:30464375..30464399 (25 bp)
TTGCGACGGTGAGTGGCTCTATGCA
LOC_Os01g52460
Os.23127.1.S1_s_at--145--7391Chr01:30464383..30464407 (25 bp)
GTGAGTGGCTCTATGCAGATACCGA
LOC_Os01g52460
Os.23127.1.S1_s_at--439--7531Chr01:30464387..30464411 (25 bp)
GTGGCTCTATGCAGATACCGATGGC
LOC_Os01g52460
Os.23127.1.S1_s_at--802--10111Chr01:30464394..30464418 (25 bp)
TATGCAGATACCGATGGCATTCTCA
LOC_Os01g52460
Os.23127.1.S1_s_at--1098--1951Chr01:30464436..30464460 (25 bp)
ACTGTGTAAACCTCTCTGTGTGTCT
LOC_Os01g52460
Os.23127.1.S1_s_at--339--7051Chr01:30464441..30464465 (25 bp)
GTAAACCTCTCTGTGTGTCTGTGTA
LOC_Os01g52460
Target Sequence 
TCATGGAAGGGTTCTCGTGGTTGATGGTGGTGGGAGCTTGCGCTGTGCCATTTTGGGTGGCAACCCTGTGCAGCAGGCAC
AGAACAATGGGTGGGCTGGCATCGTCGTCAATGGTTGCATCAGGGACGTGGATGAAATCAATGGCTGTGACATTGGTGTC
CGGGCTCTGAACTCACATCCTATGAAGGCAAACAAGAAGGGAATAGGTGAGAAGCATGTGCCNTGTGNACCATCGCANGG
GACCAGGATTTGCGACGGTGAGTGGCTCTATGCAGATACCGATGGCATTCTCATCTCGAGGACTGAATTGACTGTGTAAA
CCTCTCTGTGTGTCTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23127.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis