Browse Element(s) Details


Os.23131.1.S1_at

Description gb:AK062216.1
DB_XREF= gi:32972234
TID=Os.23131.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A10, full insert sequence.
FL= gb:AK065087.1 gb:AK062216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01550OsAffx.16777.1.S1_at11/118+322679..323347hypothetical protein
LOC_Os08g01550OsAffx.16777.1.S1_x_at11/118+322679..323347hypothetical protein
LOC_Os08g01560OsAffx.28979.1.S1_at11/118+325748..326029hypothetical protein
LOC_Os08g01570OsAffx.27394.1.S1_at4/118+328895..331475transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g01580OsAffx.16778.1.S1_at11/118+335868..340386NB-ARC domain containing protein
LOC_Os08g01590Os.23131.1.S1_at11/118+345740..347482expressed protein
LOC_Os08g01590OsAffx.29825.1.S1_x_at2/118+345740..347482expressed protein
LOC_Os08g01600OsAffx.28980.1.S1_at11/118+350768..354209glycoside hydrolase family 28 protein, putative
LOC_Os08g01610Os.18706.1.S1_x_at10/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_x_at7/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.18706.1.S1_at6/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01610Os.33584.1.S1_at3/118+354808..360214GDP-mannose transporter, putative, expressed
LOC_Os08g01620Os.7321.1.S1_at11/118+361414..364631Shwachman-Bodian-Diamond syndrome protein homolog, putative, expressed
LOC_Os08g01630Os.49890.1.S1_at11/118+365110..367507DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os08g01640Os.49986.1.S1_at11/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os08g01640Os.52705.1.S1_at3/118+367770..370405Rf1 protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23131.1.S1_at--14--7471Chr08:346301..346325 (25 bp)
GTGTGCAAGAGCTACCACCACGAGA
LOC_Os08g01590
Os.23131.1.S1_at--197--891Chr08:346213..346237 (25 bp)
AGGCCAGCGACGTCCAGATGGAGCA
LOC_Os08g01590
Os.23131.1.S1_at--493--8071Chr08:346194..346218 (25 bp)
GGAGCAATTCAACCTCTGATCATCA
LOC_Os08g01590
Os.23131.1.S1_at--956--6371Chr08:346153..346177 (25 bp)
GATCCGATCGCTGTGAGTTGCGCTT
LOC_Os08g01590
Os.23131.1.S1_at--1037--6671Chr08:346137..346161 (25 bp)
GTTGCGCTTGGATTATATCTCTGTA
LOC_Os08g01590
Os.23131.1.S1_at--989--2251Chr08:346045..346069 (25 bp)
AAATCAGGCTGGATCTCAATTGGGA
LOC_Os08g01590
Os.23131.1.S1_at--1--10831Chr08:346026..346050 (25 bp)
TTGGGAGAATAACCTGTCAGCTGTA
LOC_Os08g01590
Os.23131.1.S1_at--813--3291Chr08:345899..345923 (25 bp)
CAAAGGCTAGCTACGTTGATTCAAC
LOC_Os08g01590
Os.23131.1.S1_at--747--8812Chr08:345883..345907 (25 bp)
TGATTCAACGGTTTCTTAGCTGTGA
LOC_Os08g01590
Os.23131.1.S1_at--188--1571Chr08:345834..345858 (25 bp)
AGCTTTGGATAATTCAGTGCGCTCC
LOC_Os08g01590
Os.23131.1.S1_at--834--3451Chr08:345820..345844 (25 bp)
CAGTGCGCTCCTGTATTACTAGTAC
LOC_Os08g01590
Target Sequence 
GTGTGCAAGAGCTACCACCACGAGAGCATCGACAAGAGCAACCTCTCCGACCACCTCGAGGTCTACCTCGGCGAGTACGT
CCCGCTCAAGGCCAGCGACGTCCAGATGGAGCAATTCAACCTCTGATCATCAACCCTCCGCTCCATCCGATCCGATCGCT
GTGAGTTGCGCTTGGATTATATCTCTGTAATCATCATATTTTTATTCTCATCAACACAGATACTCATACCACAAAAACAC
AGTTTGGGATGGCTCAAAATCAGGCTGGATCTCAATTGGGAGAATAACCTGTCAGCTGTATTTGTACCAGTAGACATTAG
AGGTTGTGTATTGCATTTTCTGTTTTGATCGAATTCAATCCCAAAAAGCAACAACAAAGTATACTAGTGCAAATTAGAAC
AACAAAGGCTAGCTACGTTGATTCAACGGTTTCTTAGCTGTGAAAACATGATCATGCATTCATGCTAAGCTTTGGATAAT
TCAGTGCGCTCCTGTATTACTAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis