Browse Element(s) Details


Os.23175.1.S1_at

Description gb:AK068122.1
DB_XREF= gi:32978140
TID=Os.23175.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135H15, full insert sequence.
FL= gb:AK068122.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5791011/11F-box domain containing protein, expressed
LOC_Os02g578802/11hypothetical protein
LOC_Os02g579601/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57830OsAffx.24910.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57830Os.7375.1.S1_at11/112+35415150..35417750expressed protein
LOC_Os02g57840Os.28617.1.S1_at11/112+35418133..35419754Remorin, C-terminal region family protein, expressed
LOC_Os02g57850Os.11920.1.S1_s_at1/112+35420449..35421472hypothetical protein
LOC_Os02g57860Os.23627.1.A1_at6/112+35425163..35426971F-box domain containing protein, expressed
LOC_Os02g57870Os.23608.1.S1_at11/112+35427793..35429999expressed protein
LOC_Os02g57880Os.23175.1.S1_at2/112+35431872..35433039hypothetical protein
LOC_Os02g57890Os.53591.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57890OsAffx.3098.1.S1_at1/112+35435057..35436739F-box domain containing protein
LOC_Os02g57900OsAffx.12685.1.S1_at9/112+35437471..35441000hypothetical protein
LOC_Os02g57900Os.53104.1.S1_at2/112+35437471..35441000hypothetical protein
LOC_Os02g57900OsAffx.18815.1.S1_x_at1/112+35437471..35441000hypothetical protein
LOC_Os02g57910Os.23175.1.S1_at11/112+35441874..35444096F-box domain containing protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_s_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.38248.1.S1_at11/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.12010.1.S1_x_at10/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920OsAffx.3097.1.S1_x_at9/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_at8/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.39181.1.A1_x_at4/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_x_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57920Os.43072.1.S1_at2/112+35445714..35456230Cation transporter/ATPase, N-terminus family protein, expressed
LOC_Os02g57930Os.27691.1.S1_x_at4/112+35460748..35466204retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23175.1.S1_at--159--3111Chr02:35443504..35443528 (25 bp)
AATATTGTGACAGACCAGGTGGAAC
LOC_Os02g57910
Os.23175.1.S1_at--249--2592Chr02:35443558..35443582 (25 bp)
AACGTGCAGTGGGAGTCATCTTCAT
LOC_Os02g57910
Os.23175.1.S1_at--468--7131Chr02:35443572..35443596 (25 bp)
GTCATCTTCATCTAATGGTTTCAGG
LOC_Os02g57910
Os.23175.1.S1_at--257--6831Chr02:35443628..35443652 (25 bp)
GTTTCCAACCAGATGACAACTTTTT
LOC_Os02g57910
Os.23175.1.S1_at--753--932Chr02:35443663..35443687 (25 bp)
AGGCACATCATGGAAACCGCGGTTA
LOC_Os02g57910
Os.23175.1.S1_at--75--1791Chr02:35443678..35443702 (25 bp)
ACCGCGGTTAACCTAGAGGAGATAT
LOC_Os02g57910
Os.23175.1.S1_at--534--6834Chr02:35443972..35443996 (25 bp)
GTTTCAAACGTTTCAAGGCATGCAT
LOC_Os02g57910
Os.23175.1.S1_at--734--1474Chr02:35443998..35444022 (25 bp)
AGAATTCTCTTGTTTCCTGCAACTT
LOC_Os02g57910
Os.23175.1.S1_at--873--9013Chr02:35444015..35444039 (25 bp)
TGCAACTTGGTTTCAGGCCAGCAGC
LOC_Os02g57910
Os.23175.1.S1_at--575--4411Chr02:35444031..35444055 (25 bp)
GCCAGCAGCCTGGATATATAATGTA
LOC_Os02g57910
Os.23175.1.S1_at--43--5272Chr02:35444069..35444093 (25 bp)
GAATGTTTTGAATATCCTGGTTTCT
LOC_Os02g57910
Target Sequence 
AATATTGTGACAGACCAGGTGGAACGGGAAGAAGAGGGTTACTGTGACAAAACAAACGTGCAGTGGGAGTCATCTTCATC
TAATGGTTTCAGGCATTACAATCTGGTTAAGCTCACCATCTATGGTTTCCAACCAGATGACAACTTTTTGGGATACATCA
GGCACATCATGGAAACCGCGGTTAACCTAGAGGAGATATCCCTGTACNACAGGAAGGTGGAAGATTGCTGTGAAGAGTTG
GATCCCAAGATCAAAATTGCTCCGTCAAGGTATCCACAGACCATTGAGGAGCAGGAGTTGCTGAGGAAGCAAATTACAGA
GGGATTGGTGATGGCGTTGCCTCATGTAATTCACTTCCGGTCTTAATTCCTCGGCGCAAANATGCAATTAGCTGAGTAGC
AATAATGTATGCTGAATGTTCTGAATATTTTGGTTTCTTCTTCTTTCCTTTTGTGATGANAACACTCTAGTTTCAAACGT
TTCAAGGCATGCATTAGAATTCTCTTGTTTCCTGCAACTTGGTTTCAGGCCAGCAGCCTGGATATATAATGTAAGCAGTA
TATTTTGAATGTTTTGAATATCCTGGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis