Browse Element(s) Details

Os.23179.1.S1_at

Description

gb:AK069538.1
DB_XREF= gi:32979562
TID=Os.23179.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23179 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020A02, full insert sequence.
FL= gb:AK069538.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49990	9/11	UPF0183 protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49950	OsAffx.9045.1.S1_x_at	3/11	6	+	30243637..30250401	retrotransposon protein, putative, unclassified
LOC_Os06g49950	OsAffx.9045.1.S1_at	3/11	6	+	30243637..30250401	retrotransposon protein, putative, unclassified
LOC_Os06g49950	OsAffx.22492.1.S1_at	1/11	6	+	30243637..30250401	retrotransposon protein, putative, unclassified
LOC_Os06g49950	OsAffx.22492.1.S1_x_at	1/11	6	+	30243637..30250401	retrotransposon protein, putative, unclassified
LOC_Os06g49960	Os.31312.2.S1_x_at	4/11	6	+	30251030..30254277	retrotransposon protein, putative, unclassified
LOC_Os06g49960	Os.31312.5.S1_x_at	4/11	6	+	30251030..30254277	retrotransposon protein, putative, unclassified
LOC_Os06g49970	Os.50953.1.S1_at	11/11	6	+	30261973..30265888	Alpha-amylase isozyme C2 precursor, putative, expressed
LOC_Os06g49980	OsAffx.16004.1.S1_s_at	11/11	6	+	30268980..30271803	expressed protein
LOC_Os06g49990	Os.23179.1.S1_at	9/11	6	+	30273491..30278004	UPF0183 protein, putative, expressed
LOC_Os06g50000	Os.46326.1.S1_at	11/11	6	+	30278368..30280743	Complex 1 protein containing protein, expressed
LOC_Os06g50010	Os.47463.1.S1_x_at	6/11	6	+	30281923..30286785	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50010	Os.14491.2.S1_x_at	5/11	6	+	30281923..30286785	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50020	NA	NA	6	+	30288322..30291653	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g50030	OsAffx.28195.1.S1_x_at	11/11	6	+	30300745..30307151	CDPK-related protein kinase, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.23179.1.S1_at--492--637	1	Chr06:30274198..30274222 (25 bp)	GATCCTTGGTGATTGTGGTCGAGCA	LOC_Os06g49990
Os.23179.1.S1_at--610--303	1	Chr06:30274171..30274195 (25 bp)	AATCCAGACGCAAGGCTCCATGAAT	LOC_Os06g49990
Os.23179.1.S1_at--1028--255	1	Chr06:30273970..30273994 (25 bp)	AACTGTTACCCTCTTTCAATCATGA	LOC_Os06g49990
Os.23179.1.S1_at--1013--785	1	Chr06:30273945..30273969 (25 bp)	GGTATGTATTTGTCCTTGCTGCACA	LOC_Os06g49990
Os.23179.1.S1_at--788--625	1	Chr06:30273841..30273865 (25 bp)	GATGGTGATGCATATCCAGCCGCAT	LOC_Os06g49990
Os.23179.1.S1_at--211--923	1	Chr06:30273827..30273851 (25 bp)	TCCAGCCGCATCTGCATTAATGGTT	LOC_Os06g49990
Os.23179.1.S1_at--715--231	1	NONE	AAAGTGCTTGGTTCTGGCCATGGAA	NONE
Os.23179.1.S1_at--1162--165	1	Chr06:30273661..30273685 (25 bp)	AGCCGCAGCGCTCAGCATGGATAAG	LOC_Os06g49990
Os.23179.1.S1_at--1159--125	1	Chr06:30273525..30273549 (25 bp)	AGATATACCAGCTGTACTGCCTGTT	LOC_Os06g49990
Os.23179.1.S1_at--144--701	1	Chr06:30273512..30273536 (25 bp)	GTACTGCCTGTTTAATTCGATCCCA	LOC_Os06g49990
Os.23179.1.S1_at--170--309	1	Chr06:30273480..30273504 (25 bp)	AATAATGGGCGTGCTTTCCTTTCCA	NONE

Target Sequence

GATCCTTGGTGATTGTGGTCGAGCAGCAATCCAGACGCAAGGCTCCATGAATAATCCATTTGGGTCAACTTTTGTCTATG
GATATCAGAATATTGCTTTTGAGGTCATGAAAAATGGATATATTGCAACTGTTACCCTCTTTCAATCATGAGGTATGTAT
TTGTCCTTGCTGCACATAGTATGCAAAATCTGTAACACTGAGTCACTGACCAACAGTGAAACGGGACAAAAATTTCAATC
TCAGTGCTAACAGCTGATGGTGATGCATATCCAGCCGCATCTGCATTAATGGTTAGACAGTGCTGCTACTCCAAATGGGA
CTCTAGAAAGTGCTTGGTTCTGGCCATGGAATGCAGCCGCAGCGCTCAGCATGGATAAGCATCACTACCTTGTATTCATT
CTGTAGATACAACTCATTGTACAGGAACTAATTGTATCCTGCAATCTTACGTTTTGTACATATGATATTTATTTGTTGAA
ACAAGAATTCAGATATACCAGCTGTACTGCCTGTTTAATTCGATCCCAGTGATGAAATAATGGGCGTGCTTTCCTTTCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis