Browse Element(s) Details


Os.23194.1.S1_at

Description gb:AK063328.1
DB_XREF= gi:32973346
TID=Os.23194.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23194 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H09, full insert sequence.
FL= gb:AK063328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3146010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31390NANA10+16135436..16136398retrotransposon protein, putative, unclassified
LOC_Os10g31400OsAffx.20293.1.S1_at10/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31400Os.26999.2.A1_at3/1110+16137779..16138643retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g31420Os.54325.1.S1_at11/1110+16146756..16147689transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31440Os.46900.1.S1_at11/1110+16151686..16152722transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31460Os.23194.1.S1_at10/1110+16156932..16157770expressed protein
LOC_Os10g31470Os.46671.1.S1_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31470Os.46671.1.S1_x_at11/1110+16161819..16162579transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31480Os.50536.1.S1_at11/1110+16164903..16165848expressed protein
LOC_Os10g31480Os.51848.1.S1_x_at1/1110+16164903..16165848expressed protein
LOC_Os10g31490NANA10+16168531..16169088transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31500OsAffx.121.1.S1_s_at11/1110+16171271..16172350transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os10g31510OsAffx.6829.1.S1_at11/1110+16178272..16178850hypothetical protein
LOC_Os10g31520Os.13981.1.S1_at11/1110+16179695..16183455Ribosomal RNA assembly protein mis3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23194.1.S1_at--373--2151NONE
ACAGAATGGCGGATCCGGATACGGT
NONE
Os.23194.1.S1_at--653--8571Chr10:16157154..16157178 (25 bp)
TGGTGGACACCCATAAAAACATGTA
LOC_Os10g31460
Os.23194.1.S1_at--476--3091Chr10:16157122..16157146 (25 bp)
AATAAACTAGCACCACAGGCCATGT
LOC_Os10g31460
Os.23194.1.S1_at--644--3311Chr10:16157109..16157133 (25 bp)
CACAGGCCATGTGTGCTGATTGCAT
LOC_Os10g31460
Os.23194.1.S1_at--484--7311Chr10:16157097..16157121 (25 bp)
GTGCTGATTGCATGTTTGAGAGATG
LOC_Os10g31460
Os.23194.1.S1_at--589--2291Chr10:16157046..16157070 (25 bp)
AAAGGGCCTCCGTTGAATACACTGT
LOC_Os10g31460
Os.23194.1.S1_at--520--8431Chr10:16157042..16157066 (25 bp)
GGCCTCCGTTGAATACACTGTAATA
LOC_Os10g31460
Os.23194.1.S1_at--718--6991Chr10:16157010..16157034 (25 bp)
GTACTGGTCATTGTACACCACAATT
LOC_Os10g31460
Os.23194.1.S1_at--745--10811Chr10:16157000..16157024 (25 bp)
TTGTACACCACAATTCTACACAGCC
LOC_Os10g31460
Os.23194.1.S1_at--181--1651Chr10:16156979..16157003 (25 bp)
AGCCCACCGGTGTAACTAGATGTTT
LOC_Os10g31460
Os.23194.1.S1_at--993--7411Chr10:16156939..16156963 (25 bp)
GTGTTGACAGTGTTGCGTCATACTT
LOC_Os10g31460
Target Sequence 
ACAGAATGGCGGATCCGGATACGGTTCCGGTTCTGGGTCTGGTTATGGACAAGCTGGTGGGTATGGACCATATGGTGGAG
GATATGCTCAAGGAGGGGGTGGCGGACAAGGTGGCGGTGGTGGACAAAATGGTGGATCCGGATCTGGGTATGGCTCTGGC
TCTGGGTATGGTCAAGCTGGAGGGTATGGGCCGTACGGTGGTGGATATGCTCAGGCCGGTGGCCAAGGTGGCGGTGGCGG
TGGTGGACAGAGCGGTCCTGGTGGCAGCGGGTATGGTAGTGGATCAGGAAGCGGATCTGGAAGTGCGTATGGTGGACACC
CATAAAAACATGTAGAATCTAAATAAACTAGCACCACAGGCCATGTGTGCTGATTGCATGTTTGAGAGATGTGTTATTTA
CGTAAATAATGGGTAATAAAGGGCCTCCGTTGAATACACTGTAATAACAAAATGTACTGGTCATTGTACACCACAATTCT
ACACAGCCCACCGGTGTAACTAGATGTTTGATCAATACATAGTAGTGTTGACAGTGTTGCGTCATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis