Browse Element(s) Details


Os.23204.1.S1_at

Description gb:AK070206.1
DB_XREF= gi:32980230
TID=Os.23204.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042E01, full insert sequence.
FL= gb:AK070206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3116010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31150Os.7308.1.S2_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.1.S1_x_at11/113+17692983..17696491expressed protein
LOC_Os03g31150Os.7308.2.S1_at11/113+17692983..17696491expressed protein
LOC_Os03g31160Os.7630.1.S1_s_at11/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23204.1.S1_at10/113+17696957..17698815expressed protein
LOC_Os03g31160Os.23259.1.S1_at1/113+17696957..17698815expressed protein
LOC_Os03g31170Os.5655.1.S1_at11/113+17700306..17703399Inosine-uridine preferring nucleoside hydrolase family protein, expressed
LOC_Os03g31180Os.50285.2.S1_x_at2/113+17711795..17715500Diacylglycerol kinase 1, putative
LOC_Os03g31190NANA3+17716520..17716969retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31200NANA3+17718080..17722450retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23204.1.S1_at--336--511Chr03:17697601..17697625 (25 bp)
ATCGTCCACTGGTATTTGATTTTCA
LOC_Os03g31160
Os.23204.1.S1_at--386--10792Chr03:17697616..17697640 (25 bp)
TTGATTTTCATTTCTATTCCCCACC
LOC_Os03g31160
Os.23204.1.S1_at--471--10312Chr03:17697626..17697650 (25 bp)
TTTCTATTCCCCACCAAGATTTGAG
LOC_Os03g31160
Os.23204.1.S1_at--255--9312Chr03:17697633..17697657 (25 bp)
TCCCCACCAAGATTTGAGGTGTTGT
LOC_Os03g31160
Os.23204.1.S1_at--762--7412Chr03:17697651..17697675 (25 bp)
GTGTTGTTTTGTGTGATGCCCTGCC
LOC_Os03g31160
Os.23204.1.S1_at--96--8792Chr03:17697690..17697714 (25 bp)
TGTTTTTCCTACAAGCATGGTGATG
LOC_Os03g31160
Os.23204.1.S1_at--957--1472Chr03:17697703..17697727 (25 bp)
AGCATGGTGATGTGGCGATCTTAAA
LOC_Os03g31160
Os.23204.1.S1_at--1137--6252Chr03:17697711..17697735 (25 bp)
GATGTGGCGATCTTAAAGCTATCAG
LOC_Os03g31160
Os.23204.1.S1_at--417--2352Chr03:17697725..17697749 (25 bp)
AAAGCTATCAGTTACGCCTGCATGA
LOC_Os03g31160
Os.23204.1.S1_at--162--9952Chr03:17697737..17697761 (25 bp)
TACGCCTGCATGACCTGTAATGTAA
LOC_Os03g31160
Os.23204.1.S1_at--553--5831NONE
GACCTGTAATGTAACCTCTCATTTA
NONE
Target Sequence 
ATCGTCCACTGGTATTTGATTTTCATTTCTATTCCCCACCAAGATTTGAGGTGTTGTTTTGTGTGATGCCCTGCCTACAA
GGTGTTCGTTGTTTTTCCTACAAGCATGGTGATGTGGCGATCTTAAAGCTATCAGTTACGCCTGCATGACCTGTAATGTA
ACCTCTCATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis