Browse Element(s) Details


Os.23309.1.S1_a_at

Description gb:AK101641.1
DB_XREF= gi:32986850
TID=Os.23309.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23309 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0029C15.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033055K08, full insert sequence.
FL= gb:AK101641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3438011/11FF domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34300OsAffx.30667.1.S1_at11/1110+17965074..17967592F-box domain containing protein
LOC_Os10g34310Os.24902.1.S1_at9/1110+17968231..17970513Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os10g34320Os.54931.1.S2_at11/1110+17971833..17975139expressed protein
LOC_Os10g34320Os.54931.1.S1_at11/1110+17971833..17975139expressed protein
LOC_Os10g34330OsAffx.30668.1.S1_at10/1110+17975392..17977020hypothetical protein
LOC_Os10g34340OsAffx.30669.1.S1_at11/1110+17979450..17981818F-box domain containing protein
LOC_Os10g34350Os.27128.1.A1_a_at11/1110+17982248..17984720aminotransferase, classes I and II family protein, expressed
LOC_Os10g34360Os.168.1.S1_at11/1110+17986723..17989063Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os10g34370Os.46660.1.S1_x_at11/1110+17989365..17990845expressed protein
LOC_Os10g34380Os.23309.1.S1_a_at11/1110+17991518..18002175FF domain containing protein, expressed
LOC_Os10g34390Os.46063.1.S1_at11/1110+18003257..18010180Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os10g34400Os.11918.1.S1_at11/1110+18013400..18022397expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23309.1.S1_a_at--144--2811Chr10:17992546..17992661 (25 bp)
AAGATCCCAAGGCATCATGGACAGA
LOC_Os10g34380
Os.23309.1.S1_a_at--536--871Chr10:17992491..17992515 (25 bp)
AGGCCGTGCAGTAAATCCTGATTTA
LOC_Os10g34380
Os.23309.1.S1_a_at--407--10311Chr10:17992442..17992466 (25 bp)
TTTCGTGACCATGTCAAGGACCTGT
LOC_Os10g34380
Os.23309.1.S1_a_at--144--2931Chr10:17991967..17992451 (25 bp)
AAGGACCTGTATGAGCGATGTGTTC
LOC_Os10g34380
Os.23309.1.S1_a_at--378--791Chr10:17991950..17991974 (25 bp)
ATGTGTTCGGGATTTCCGTGCGCTC
LOC_Os10g34380
Os.23309.1.S1_a_at--138--4011Chr10:17991934..17991958 (25 bp)
CGTGCGCTCCTATCTGAGGTGATAA
LOC_Os10g34380
Os.23309.1.S1_a_at--364--6471Chr10:17991914..17991938 (25 bp)
GATAACTCCAGAGATAGCTGCTCGA
LOC_Os10g34380
Os.23309.1.S1_a_at--308--1391Chr10:17991873..17991897 (25 bp)
AGACTGCAATTAACTCCTGGACCGA
LOC_Os10g34380
Os.23309.1.S1_a_at--520--1771Chr10:17991795..17991819 (25 bp)
ACCGGGAGTCTATTTGGCGGCGCTA
LOC_Os10g34380
Os.23309.1.S1_a_at--439--3931Chr10:17991778..17991802 (25 bp)
CGGCGCTATGCGGACGACATGAAGA
LOC_Os10g34380
Os.23309.1.S1_a_at--891--5551Chr10:17991708..17991732 (25 bp)
GAAAGCAGCGTAGGTCCTCTGATCC
LOC_Os10g34380
Target Sequence 
AAGATCCCAAGGCATCATGGACAGAATCCAAACCAAGACTTGAAAAGGATCCACAAGGCCGTGCAGTAAATCCTGATTTA
GGTAAAGGTGATGCAGAAAAGTTATTTCGTGACCATGTCAAGGACCTGTATGAGCGATGTGTTCGGGATTTCCGTGCGCT
CCTATCTGAGGTGATAACTCCAGAGATAGCTGCTCGAACAACAGATGAAGGAAAGACTGCAATTAACTCCTGGACCGAAG
CAAAAGGTCTTCTAAGATCTGATCCNAGGTACAACAAACTGGCAAGTAAAGACCGGGAGTCTATTTGGCGGCGCTATGCG
GACGACATGAAGACAAAACTTAAACAGTCAGATATGAAGGAGANATCAGATACAGATGGAAAGCAGCGTAGGTCCTCTGA
TCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23309.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis