Browse Element(s) Details


Os.23350.1.S1_at

Description gb:AK099110.1
DB_XREF= gi:32984319
TID=Os.23350.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031J01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031J01, full insert sequence.
FL= gb:AK072324.1 gb:AK099110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4632011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46250Os.53675.1.S1_at11/115+26737462..26740223expressed protein
LOC_Os05g46250OsAffx.15124.1.S1_at9/115+26737462..26740223expressed protein
LOC_Os05g46260Os.8729.1.S1_at11/115+26741375..26745667expressed protein
LOC_Os05g46270Os.4469.1.S1_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.4469.1.S2_at11/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46270Os.27414.2.S1_x_at1/115+26745364..26750134XPG I-region family protein, expressed
LOC_Os05g46280Os.51305.1.S1_at11/115+26751145..26752237expressed protein
LOC_Os05g46290Os.22773.1.S1_at11/115+26752405..26757037Chaperonin CPN60-2, mitochondrial precursor, putative, expressed
LOC_Os05g46300OsAffx.4635.1.S1_at11/115+26758153..26759784F-box domain containing protein
LOC_Os05g46310OsAffx.4636.1.S1_at11/115+26761922..26762302expressed protein
LOC_Os05g46320Os.23350.1.S1_at11/115+26762907..26764716F-box domain containing protein, expressed
LOC_Os05g46330Os.11178.1.S1_at10/115+26766596..26773768Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g46340Os.17889.1.S1_at11/115+26775124..26776542expressed protein
LOC_Os05g46350Os.54961.1.S1_at11/115+26780094..26782862IQ calmodulin-binding motif family protein, expressed
LOC_Os05g46360Os.11146.1.S2_at11/115+26785088..26787884lysine decarboxylase, putative, expressed
LOC_Os05g46360Os.11146.1.S1_at11/115+26785088..26787884lysine decarboxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23350.1.S1_at--545--4471Chr05:26763367..26763391 (25 bp)
GCCTCCTACTTGAAGCAGCACCATG
LOC_Os05g46320
Os.23350.1.S1_at--309--10131Chr05:26763318..26763342 (25 bp)
TATCCCTTGGGATGACGATTCTTTT
LOC_Os05g46320
Os.23350.1.S1_at--579--7651Chr05:26763310..26763334 (25 bp)
GGGATGACGATTCTTTTGATGAAAT
LOC_Os05g46320
Os.23350.1.S1_at--645--1331Chr05:26763246..26763270 (25 bp)
AGAGTTGGTTGTAATTGGTTTCGAG
LOC_Os05g46320
Os.23350.1.S1_at--811--4811Chr05:26763155..26763179 (25 bp)
GCTCTATTTAGATATGGGCATGTTC
LOC_Os05g46320
Os.23350.1.S1_at--110--8891Chr05:26763100..26763124 (25 bp)
TGAGGCAGCAACACCATTGGAATGA
LOC_Os05g46320
Os.23350.1.S1_at--778--5971Chr05:26763071..26763095 (25 bp)
GAGAAAGCCCAAATTCTGAACCAGT
LOC_Os05g46320
Os.23350.1.S1_at--427--6571Chr05:26763035..26763059 (25 bp)
GATTCTTGCTCAATAACTCCAGTTC
LOC_Os05g46320
Os.23350.1.S1_at--730--6111Chr05:26762999..26763023 (25 bp)
GAGTGATCTGTTATGTTAATGTTTT
LOC_Os05g46320
Os.23350.1.S1_at--330--2351Chr05:26762949..26762973 (25 bp)
AAAGCATGCATCTGTTATGTTACTT
LOC_Os05g46320
Os.23350.1.S1_at--874--4971Chr05:26762942..26762966 (25 bp)
GCATCTGTTATGTTACTTGTATACA
LOC_Os05g46320
Target Sequence 
GCCTCCTACTTGAAGCAGCACCATGCCTGGAGAGCCTTCACATCCATATTATCCCTTGGGATGACGATTCTTTTGATGAA
ATCATTTGGCAACCATCCACTTTGCAGCATGAAGAACTAAAAGAGTTGGTTGTAATTGGTTTCGAGGGAACAGAAAGACA
GATTTACTTTGTTAACTTTGTGATGGAAGTATCAACAACATTGCAGCTTGTTGCTCTATTTAGATATGGGCATGTTCAAG
AAATGGGGCGTTGGGACTGGAAAATTGTGAGGCAGCAACACCATTGGAATGATGAGGAGAAAGCCCAAATTCTGAACCAG
TTTGCTGATAGAGATTCTTGCTCAATAACTCCAGTTCAAGTAGTTGTAGAGTGATCTGTTATGTTAATGTTTTACTTGTA
TACAAGGCTTTAAGTTATAAAGCATGCATCTGTTATGTTACTTGTATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis