Browse Element(s) Details


Os.23443.1.S1_at

Description gb:AK101926.1
DB_XREF= gi:32987135
TID=Os.23443.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071P11, full insert sequence.
FL= gb:AK101926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4375010/11Adenosine kinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43720OsAffx.10048.1.S1_x_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43720OsAffx.26928.1.S1_at1/114+25653952..25659331retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g43730OsAffx.26450.1.S1_at11/114+25665811..25669202Protein kinase domain containing protein
LOC_Os04g43740OsAffx.14257.1.S1_x_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43740OsAffx.14257.1.S1_at11/114+25677699..25678088auxin-responsive family protein, putative, expressed
LOC_Os04g43750Os.23443.1.S1_at10/114+25679149..25683278Adenosine kinase 2, putative, expressed
LOC_Os04g43760Os.37893.1.S1_at11/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760OsAffx.27816.1.S1_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43760Os.9330.1.S1_x_at1/114+25687775..25690981Phenylalanine ammonia-lyase, putative, expressed
LOC_Os04g43770Os.24233.2.S1_at1/114+25693037..25696005expressed protein
LOC_Os04g43780Os.27691.2.S1_x_at2/114+25701382..25702302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g43790NANA4+25704870..25706367hypothetical protein
LOC_Os04g43800Os.52536.1.S1_at11/114+25707996..25710635Phenylalanine ammonia-lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006169biological_processadenosine salvage
GO:0004001molecular_functionadenosine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23443.1.S1_at--782--1271Chr04:25680812..25680836 (25 bp)
AGATCTCGCAATTGCCTAAGGCTTC
LOC_Os04g43750
Os.23443.1.S1_at--974--6551Chr04:25680772..25680796 (25 bp)
GATTACTGTCATTACTCAAGGCTGT
LOC_Os04g43750
Os.23443.1.S1_at--758--91NONE
ATTCCCTGTTATCGTTTTGCCCGAG
NONE
Os.23443.1.S1_at--781--7671Chr04:25679509..25679533 (25 bp)
GGGTTTTCTCTCTCAATTGGTTCAG
LOC_Os04g43750
Os.23443.1.S1_at--47--6111Chr04:25679341..25679365 (25 bp)
GAGTGCTTTTTGACATTTCCACCAC
LOC_Os04g43750
Os.23443.1.S1_at--371--1711Chr04:25679321..25679345 (25 bp)
ACCACTACTCAAGGCACATTTCTAG
LOC_Os04g43750
Os.23443.1.S1_at--558--10071Chr04:25679299..25679323 (25 bp)
TAGTGCACCCTAGGCATGTTTGGAT
LOC_Os04g43750
Os.23443.1.S1_at--552--4451Chr04:25679261..25679285 (25 bp)
GCCTTATCTCTTTGGCATGGCAGGA
LOC_Os04g43750
Os.23443.1.S1_at--677--2311Chr04:25679208..25679232 (25 bp)
AAAGGATCATGCCACTCAGTCAATA
LOC_Os04g43750
Os.23443.1.S1_at--114--5171Chr04:25679179..25679203 (25 bp)
GCAAGACCCTTCAGTTGCAATTCCA
LOC_Os04g43750
Os.23443.1.S1_at--45--7291Chr04:25679152..25679176 (25 bp)
GTGCCATCTCTTTCTGCATTTACAA
LOC_Os04g43750
Target Sequence 
AGATCTCGCAATTGCCTAAGGCTTCAGGAGCACACAAGAGGATTACTGTCATTACTCAAGGCTGTGACCCAGTAGTTGTG
GCTGATGATGGAAAGGTCAAAACATTCCCTGTTATCGTTTTGCCCGAGGAAAAGCTTGTTGACACCAATGGTGCAGGCGA
TGCCTTTGTTGGGGGTTTTCTCTCTCAATTGGTTCAGGAGAAGAGCATTGATGAATGTGTCAGAGCTGCTTGTTATGCTG
CAAACGTTATCATCCAACGCTCAGGCTGCACTTACCCTGAGAAGCCTGACTTCAACTAGAGCCATTTCAGCATATTGAGA
AAGGAATAACTATAGGCGACGAGTGCTTTTTGACATTTCCACCACTACTCAAGGCACATTTCTAGTGCACCCTAGGCATG
TTTGGATAGATGAGTATAGTGCCTTATCTCTTTGGCATGGCAGGAAAGTGAACTAAAAATTCCTACCGATATGAAAGGAT
CATGCCACTCAGTCAATACAGAGCAAGACCCTTCAGTTGCAATTCCACCGTGCCATCTCTTTCTGCATTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis