Browse Element(s) Details


Os.2353.2.S1_at

Description gb:AY302436.1
DB_XREF= gi:31790177
TID=Os.2353.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2353 (NCBI UniGene Cluster)
UG_TITLE=Zinc finger transcription factor WRKY1 mRNA, complete cds
DEF=Oryza sativa (indica cultivar-group) WRKY transcription factor mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g330208/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g33000OsAffx.4916.1.S1_at1/113+18818993..18821256hypothetical protein
LOC_Os03g33010NANA3+18827985..18828593transposon protein, putative, unclassified
LOC_Os03g33012OsAffx.25352.1.S1_at11/113+18837351..18840888hypothetical protein
LOC_Os03g33012OsAffx.11392.2.S1_x_at2/113+18837351..18840888hypothetical protein
LOC_Os03g33014NANA3+18841533..18842147retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33020Os.2353.1.S1_at11/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33020Os.2353.2.S1_at8/113+18844158..18848116WRKY DNA binding domain containing protein, expressed
LOC_Os03g33030NANA3+18848240..18850265Transposable element protein, putative, Transposase_28
LOC_Os03g33040Os.47722.1.S1_at1/113+18850823..18851700hypothetical protein
LOC_Os03g33042NANA3+18855137..18856378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33044NANA3+18856940..18857569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g33050Os.24831.3.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.1.S1_x_at8/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33050Os.24831.4.S1_x_at1/113+18865062..18867952retrotransposon protein, putative, unclassified
LOC_Os03g33060Os.46314.2.S1_x_at7/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_x_at3/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.10731.2.A1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.46334.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060OsAffx.8785.1.S1_at1/113+18871657..18876391transposon protein, putative, unclassified
LOC_Os03g33060Os.47114.1.S1_x_at1/113+18871657..18876391transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2353.2.S1_at--579--2791NONE
AAGATGGTGGCGCTTTGCTAAATGA
NONE
Os.2353.2.S1_at--618--8471NONE
TGGCGCTTTGCTAAATGAAGCAGAT
NONE
Os.2353.2.S1_at--26--3231Chr03:18844932..18844956 (25 bp)
CAAGTGATAGCAACGATCAAGGCGA
LOC_Os03g33020
Os.2353.2.S1_at--294--3671NONE
CTTTTGGATGATGGCCACCGATGGC
NONE
Os.2353.2.S1_at--855--2771Chr03:18845325..18845348 (24 bp)
AAGAGCCCCATGCTATCTTGGACCC
LOC_Os03g33020
Os.2353.2.S1_at--1048--10111Chr03:18845337..18845361 (25 bp)
TATCTTGGACCCATTAATTATTCCA
LOC_Os03g33020
Os.2353.2.S1_at--1005--791Chr03:18845364..18845388 (25 bp)
ATGGGCGATCCATTTTATGCCACCA
LOC_Os03g33020
Os.2353.2.S1_at--158--10371Chr03:18845376..18845400 (25 bp)
TTTTATGCCACCACGTTCCATCAAA
LOC_Os03g33020
Os.2353.2.S1_at--530--6691Chr03:18845390..18845414 (25 bp)
GTTCCATCAAATGTCTAGTGCCATG
LOC_Os03g33020
Os.2353.2.S1_at--239--2991Chr03:18845399..18845423 (25 bp)
AATGTCTAGTGCCATGATGTCTCAC
LOC_Os03g33020
Os.2353.2.S1_at--1059--7271Chr03:18845407..18845431 (25 bp)
GTGCCATGATGTCTCACTGGAATGT
LOC_Os03g33020
Target Sequence 
AAGATGGTGGCGCTTTGCTAAATGAAGCAGATGTTTCCCCTGAGAAGGAAGATGCATCAACTAGATCAGAACAGGGCTCC
CAAGATTATTCTGGAAAATTCAAGGCATCAAATGATGGTGGTCCTTCATCATCCAGGAGGGGAGATAGGGGTGAGCAAAT
ATCGGGCTCAAGTGATAGCAACGATCAAGGCGAGGAAGAAGTGAAGGTTGAGGGTAGAGCTACTAGTGATGGAAATGCGA
ACAAAAGACATGTGCCAGCTCCAGCTCAAAGAATCATTGTGCAAACAACTAGTGAGGTTGATCTTTTGGATGATGGCCAC
CGATGGCGCAAGTATGGTCAAAAAGTAGTAAAAGGGAATCCTCACCCAAGAGCCCCATGCTATCTTGGACCCATTAATTA
TTCCAAAATGGGCGATCCATTTTATGCCACCACGTTCCATCAAATGTCTAGTGCCATGATGTCTCACTGGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2353.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis