Browse Element(s) Details


Os.23549.1.S1_a_at

Description gb:AK069750.1
DB_XREF= gi:32979774
TID=Os.23549.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.23549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026L10, full insert sequence.
FL= gb:AK069750.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4253011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g42460OsAffx.2942.1.S1_at8/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_at3/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.27681.1.S1_x_at2/112+25537499..25541540hypothetical protein
LOC_Os02g42460OsAffx.28736.2.S1_at1/112+25537499..25541540hypothetical protein
LOC_Os02g42470NANA2+25544704..25544949expressed protein
LOC_Os02g42479OsAffx.24689.1.S1_at10/112+25551670..25552531hypothetical protein
LOC_Os02g42488OsAffx.24690.1.S1_at11/112+25553858..25554435hypothetical protein
LOC_Os02g42497OsAffx.24689.1.S1_at11/112+25555953..25556814hypothetical protein
LOC_Os02g42506OsAffx.24690.1.S1_at11/112+25558141..25558718hypothetical protein
LOC_Os02g42520Os.26726.1.S1_a_at11/112+25559996..25563167oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os02g42530Os.23549.1.S1_a_at11/112+25563305..25569039expressed protein
LOC_Os02g42530OsAffx.9386.1.S1_x_at1/112+25563305..25569039expressed protein
LOC_Os02g42540Os.29053.1.S1_at11/112+25571012..25573292expressed protein
LOC_Os02g42550Os.54384.1.S1_at11/112+25573586..25576214expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_at11/112+25577602..25579828expressed protein
LOC_Os02g42560OsAffx.2376.1.S1_x_at11/112+25577602..25579828expressed protein
LOC_Os02g42570Os.27686.1.S1_at11/112+25584058..25584932Ferredoxin-thioredoxin reductase, variable chain, putative, expressed
LOC_Os02g42580Os.51093.1.S1_at11/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_x_at7/112+25586133..25589230BRO1-like domain containing protein, expressed
LOC_Os02g42580OsAffx.2943.1.S1_at1/112+25586133..25589230BRO1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23549.1.S1_a_at--231--3051Chr02:25564262..25564286 (25 bp)
AATCTTGACCTTGCAGGATGCTATA
LOC_Os02g42530
Os.23549.1.S1_a_at--340--6731Chr02:25564201..25564225 (25 bp)
GTTCTTCTAAAGTTCAGAGCTGTCT
LOC_Os02g42530
Os.23549.1.S1_a_at--171--3891Chr02:25564182..25564206 (25 bp)
CTGTCTTGTTTGCAGCTGTTCCAAA
LOC_Os02g42530
Os.23549.1.S1_a_at--229--3471Chr02:25563849..25563873 (25 bp)
CAGTGGCATTTCTTGCTGCATCTGC
LOC_Os02g42530
Os.23549.1.S1_a_at--7--451Chr02:25563817..25563841 (25 bp)
ATCTTTGTACCTTGGAGACATCTGC
LOC_Os02g42530
Os.23549.1.S1_a_at--586--5971Chr02:25563803..25563827 (25 bp)
GAGACATCTGCTCCTGATTGCAGTC
LOC_Os02g42530
Os.23549.1.S1_a_at--691--6591Chr02:25563788..25563812 (25 bp)
GATTGCAGTCCTGGAGGTGTACACA
LOC_Os02g42530
Os.23549.1.S1_a_at--427--7751Chr02:25563773..25563797 (25 bp)
GGTGTACACAAGAGAGATGCCGCTA
LOC_Os02g42530
Os.23549.1.S1_a_at--399--91Chr02:25563694..25563718 (25 bp)
ATTCCAGCCGCTCCTGTGCAGATGA
LOC_Os02g42530
Os.23549.1.S1_a_at--472--6031Chr02:25563644..25563668 (25 bp)
GAGATGACAATGTGCTCCGTGCTGT
LOC_Os02g42530
Os.23549.1.S1_a_at--1065--771Chr02:25563635..25563659 (25 bp)
ATGTGCTCCGTGCTGTTGCAAAGAG
LOC_Os02g42530
Target Sequence 
AATCTTGACCTTGCAGGATGCTATATCCAAGTTGGAAGAAACTCTACAGTCTGTAAATATTGTTCTTCTAAAGTTCAGAG
CTGTCTTGTTTGCAGCTGTTCCAAAGACAACTGAAATGGTCGCAGTGGCATTTCTTGCTGCATCTGCATTTCTTATCTTT
GTACCTTGGAGACATCTGCTCCTGATTGCAGTCCTGGAGGTGTACACAAGAGAGATGCCGCTAAGGAAACAGAACACTGA
AAAGTTCCGCCGGCGGATTAGAGAGTGGTGGGCCCGCATTCCAGCCGCTCCTGTGCAGATGATCAAACCCAACGAAAGCA
AGAAAAAGAGATGACAATGTGCTCCGTGCTGTTGCAAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23549.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis