Browse Element(s) Details


Os.23550.1.S1_at

Description gb:AK069290.1
DB_XREF= gi:32979314
TID=Os.23550.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023013J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023013J02, full insert sequence.
FL= gb:AK069290.1 gb:AK065885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g582809/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58230Os.26956.1.S1_at11/112+35637135..35642039C2 domain containing protein, expressed
LOC_Os02g58240Os.35344.3.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240Os.35344.18.S1_x_at9/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58240OsAffx.22940.5.S1_x_at3/112+35644121..35649916transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g58250OsAffx.12689.1.S1_s_at11/112+35650923..35654663expressed protein
LOC_Os02g58260Os.4723.1.S1_a_at11/112+35654789..35657708metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58270Os.23550.1.S2_at5/112+35659297..35661622metallo-beta-lactamase family protein, putative, expressed
LOC_Os02g58280Os.23550.1.S1_at9/112+35662131..35665757expressed protein
LOC_Os02g58290NANA2+35667046..35667417expressed protein
LOC_Os02g58300OsAffx.3101.1.S1_at11/112+35668931..35670484membrane-associated salt-inducible protein, putative, expressed
LOC_Os02g58310OsAffx.24921.1.S1_s_at11/112+35671112..35672185expressed protein
LOC_Os02g58320Os.17922.1.S1_at6/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58320Os.13504.1.S1_s_at1/112+35673952..35675461BRICK1, putative, expressed
LOC_Os02g58330Os.54091.1.S1_at11/112+35675760..35677669pentatricopeptide, putative, expressed
LOC_Os02g58340Os.7317.1.S1_a_at11/112+35677642..35682603Peptidase family M3 containing protein, expressed
LOC_Os02g58350OsAffx.24922.1.S1_at11/112+35683378..35684521Two-component response regulator ARR3, putative, expressed
LOC_Os02g58360OsAffx.24923.1.S1_at11/112+35687740..35693548expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23550.1.S1_at--200--3551Chr02:35662392..35662415 (24 bp)
CATCGCAGTGCTTGAATGGCTGGTA
LOC_Os02g58280
Os.23550.1.S1_at--366--4931Chr02:35662267..35662406 (25 bp)
GCTTGAATGGCTGGTATCTTGTGAA
LOC_Os02g58280
Os.23550.1.S1_at--95--3911NONE
CTGGTATCTTGTGAAGGCGGTTGAT
NONE
Os.23550.1.S1_at--21--5571Chr02:35662226..35662250 (25 bp)
GAAAGCATACGGCTGCAGTATCGGT
LOC_Os02g58280
Os.23550.1.S1_at--574--9931Chr02:35662219..35662243 (25 bp)
TACGGCTGCAGTATCGGTCGCTGAA
LOC_Os02g58280
Os.23550.1.S1_at--229--4771Chr02:35662215..35662239 (25 bp)
GCTGCAGTATCGGTCGCTGAAGAAA
LOC_Os02g58280
Os.23550.1.S1_at--11--8091Chr02:35662185..35662209 (25 bp)
GGAGCTGCAGCTTCAGTCAGAGATG
LOC_Os02g58280
Os.23550.1.S1_at--381--3851Chr02:35662181..35662205 (25 bp)
CTGCAGCTTCAGTCAGAGATGAGGT
LOC_Os02g58280
Os.23550.1.S1_at--711--6031Chr02:35662166..35662190 (25 bp)
GAGATGAGGTTGCAGCCACTCACCT
LOC_Os02g58280
Os.23550.1.S1_at--38--6171Chr02:35662161..35662185 (25 bp)
GAGGTTGCAGCCACTCACCTTCCTG
LOC_Os02g58280
Os.23550.1.S1_at--354--5671Chr02:35661885..35661909 (25 bp)
GACATAAAGAGTTTGCTAGGAAGTT
NONE
Target Sequence 
CATCGCAGTGCTTGAATGGCTGGTATCTTGTGAAGGCGGTTGATAGCGGGGAAAGCATACGGCTGCAGTATCGGTCGCTG
AAGAAAGTGTNGGAGCTGCAGCTTCAGTCAGAGATGAGGTTGCAGCCACTCACCTTCCTGCACAACAAATACCCCAGTAG
TGGCAGCTGAGTTGATTGACTATCATCAGTCTTAAAACAAAAAAAAAAGAAAGGAGAAGCATATACTGTAGCAGAATAGT
CATGAGGCATGCATCGCNATCAAGCGTGTTTTGTTGTAGTAATACTAATAAAAANGTCAGTTAGAAAAGTGTGGTGATAG
TTAATCTGGTGATGATATGAAAAGGGTCTATCCTATTGGAAGGAGAAATGTCATGTGGGGGTTATTAAAAGGACATAAAG
AGTTTGCTAGGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis