Browse Element(s) Details


Os.23659.1.S1_at

Description gb:AK060945.1
DB_XREF= gi:32970963
TID=Os.23659.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30899 DNAJ-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E11, full insert sequence.
FL= gb:AK060945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6173011/11DnaJ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61700Os.6881.1.S1_at11/113+34904449..34911678expressed protein
LOC_Os03g61700Os.20337.1.S1_x_at1/113+34904449..34911678expressed protein
LOC_Os03g61710Os.6667.1.S1_at11/113+34913653..34919176Galactokinase, putative, expressed
LOC_Os03g61720Os.49265.1.S2_a_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61720Os.49265.1.S1_at11/113+34924132..34929693Acyltransferase family protein, expressed
LOC_Os03g61730Os.23659.1.S1_at11/113+34930793..34936664DnaJ domain containing protein, expressed
LOC_Os03g61740Os.27231.1.S1_at10/113+34941549..34943118Sex determination protein tasselseed 2, putative, expressed
LOC_Os03g61750Os.5885.1.S1_at11/113+34943482..34946653expressed protein
LOC_Os03g61750OsAffx.23536.1.S1_s_at1/113+34943482..34946653expressed protein
LOC_Os03g61760Os.8121.1.S1_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61760Os.8121.1.S2_at11/113+34946980..34954660SBP domain containing protein, expressed
LOC_Os03g61770OsAffx.13574.1.S1_at10/113+34957123..34959488hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23659.1.S1_at--51--6131Chr03:34931331..34931355 (25 bp)
GAGGGATCCCTAATGGTGTAAACAT
LOC_Os03g61730
Os.23659.1.S1_at--661--2791Chr03:34931289..34931313 (25 bp)
AAGAGGAGTTCTTCGAGTGGTTGCA
LOC_Os03g61730
Os.23659.1.S1_at--534--5271Chr03:34931264..34931288 (25 bp)
GAATGCACTGCAGTCTGGCATGTTT
LOC_Os03g61730
Os.23659.1.S1_at--559--3511Chr03:34931246..34931270 (25 bp)
CATGTTTGAATCGTTTGGCGCGCAA
LOC_Os03g61730
Os.23659.1.S1_at--400--1031Chr03:34931124..34931148 (25 bp)
AGGTCCGATAATGGCGATTCTTCTT
LOC_Os03g61730
Os.23659.1.S1_at--1118--2951Chr03:34931115..34931139 (25 bp)
AATGGCGATTCTTCTTTGTGAGCAG
LOC_Os03g61730
Os.23659.1.S1_at--777--2631Chr03:34931013..34931037 (25 bp)
AACCATCCTGACTCGCTTTAAGGCG
LOC_Os03g61730
Os.23659.1.S1_at--1081--8371Chr03:34930992..34931016 (25 bp)
GGCGATGCCATTCAAAATCATGATT
LOC_Os03g61730
Os.23659.1.S1_at--234--132Chr11:28133414..28133450 (25 bp)
ATTCATCTTGCTGTGATTTTTCATA
NONE
Os.23659.1.S1_at--490--3171Chr03:34930851..34930875 (25 bp)
AATTGTTTGGACAGGTAGCGCAAGC
LOC_Os03g61730
Os.23659.1.S1_at--199--1651Chr03:34930835..34930859 (25 bp)
AGCGCAAGCTACAATTTCCATACAC
LOC_Os03g61730
Target Sequence 
GAGGGATCCCTAATGGTGTAAACATGGATGGCGGAATCGATGAAGAGGAGTTCTTCGAGTGGTTGCAGAATGCACTGCAG
TCTGGCATGTTTGAATCGTTTGGCGCGCAAAACGAGCCCCCTTCCCCTGGAAGTGGAAGCAATGCCAAGGGTAGTAATAG
CAGTAGTAAGAAAAAGAAGAAGGGCNAGAAGCAATGGTAACTGAAGAAGGTCCGATAATGGCGATTCTTCTTTGTGAGCA
GAAAGAAGTANAACATATGGTGTTTGTTCGGTATAGTTATGCAGGAAAACACCCCAATAATAGGGGTCCTAGATGCTCAA
CCATCCTGACTCGCTTTAAGGCGATGCCATTCAAAATCATGATTCATCTTGCTGTGATTTTTCATATGGAGAATTAGAAA
TCAGAAGAGAAGAAAGGGCCATGTATGTGGCAAAGATTGNTGGAATGTAAAGCGCAAAATATGTTGAGCCTACATGATTG
AATTGTTTGGACAGGTAGCGCAAGCTACAATTTCCATACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis