Browse Element(s) Details


Os.23695.2.S1_at

Description gb:AK106484.1
DB_XREF= gi:32991693
TID=Os.23695.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0492G09.20 (P0492G09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-G12, full insert sequence.
FL= gb:AK106484.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g709503/11sperm protein SSP411, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70930Os.45927.1.S1_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.45927.1.S1_x_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.51245.1.S1_at1/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70980Os.9236.1.S1_at11/111+41412751..41415017expressed protein
LOC_Os01g70990OsAffx.21835.1.S1_x_at11/111+41417152..41417529Glutaredoxin-like family protein
LOC_Os01g70990OsAffx.21835.1.S1_at11/111+41417152..41417529Glutaredoxin-like family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23695.2.S1_at--878--1711Chr01:41393899..41393923 (25 bp)
ACCAGTTTGCGTTACAAAGATCCCG
LOC_Os01g70950
Os.23695.2.S1_at--366--10291Chr01:41393894..41393918 (25 bp)
TTTGCGTTACAAAGATCCCGGCCCA
LOC_Os01g70950
Os.23695.2.S1_at--94--11Chr01:41393891..41393915 (25 bp)
GCGTTACAAAGATCCCGGCCCAAGG
LOC_Os01g70950
Os.23695.2.S1_at--887--2771Chr01:41393883..41393907 (25 bp)
AAGATCCCGGCCCAAGGGATCTCAG
NONE
Os.23695.2.S1_at--1071--3911Chr01:41393876..41393900 (25 bp)
CGGCCCAAGGGATCTCAGGAAAAGT
NONE
Os.23695.2.S1_at--635--4111Chr01:41393873..41393897 (25 bp)
CCCAAGGGATCTCAGGAAAAGTGGA
NONE
Os.23695.2.S1_at--597--8151Chr01:41393833..41393857 (25 bp)
GGAAATCATACTGATGTTATCTAGT
NONE
Os.23695.2.S1_at--651--1971Chr01:41393824..41393848 (25 bp)
ACTGATGTTATCTAGTATCTGGTTT
NONE
Os.23695.2.S1_at--620--6751Chr01:41393818..41393842 (25 bp)
GTTATCTAGTATCTGGTTTATTTGC
NONE
Os.23695.2.S1_at--540--3711Chr01:41393813..41393837 (25 bp)
CTAGTATCTGGTTTATTTGCAGAGA
NONE
Os.23695.2.S1_at--194--5051Chr01:41393795..41393819 (25 bp)
GCAGAGAAATTCCACGAGGCACTGT
NONE
Target Sequence 
ACCAGTTTGCGTTACAAAGATCCCGGCCCAAGGGATCTCAGGAAAAGTGGAGTTCCAAATGAAAAAGGAAATCATACTGA
TGTTATCTAGTATCTGGTTTATTTGCAGAGAAATTCCACGAGGCACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23695.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis