Browse Element(s) Details


Os.23927.1.S1_at

Description gb:AK063992.1
DB_XREF= gi:32974010
TID=Os.23927.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0700D12.22 (P0700D12.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E07, full insert sequence.
FL= gb:AK102043.1 gb:AK063992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4063011/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40590Os.6381.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40590OsAffx.471.1.S1_at11/118+25562331..25566742Oxysterol-binding protein, expressed
LOC_Os08g40600OsAffx.21993.1.S1_at11/118+25567304..25568780Thaumatin family protein
LOC_Os08g40600OsAffx.21993.2.S1_x_at3/118+25567304..25568780Thaumatin family protein
LOC_Os08g40610Os.6512.1.S1_at11/118+25569799..25571502ribosomal protein S16 containing protein, expressed
LOC_Os08g40620Os.8803.1.S1_at11/118+25579971..25584766RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os08g40630Os.23927.1.S1_at11/118+25586637..25589064mTERF family protein, expressed
LOC_Os08g40640OsAffx.21990.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_x_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21991.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.21992.1.S1_at11/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640Os.46785.2.S1_x_at5/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_x_at2/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.442.1.S1_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40640OsAffx.30226.2.S1_x_at1/118+25590275..25600603retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23927.1.S1_at--308--2411Chr08:25587206..25587230 (25 bp)
AAAAGATCGCTACGACTTCTTGGTC
LOC_Os08g40630
Os.23927.1.S1_at--429--9051Chr08:25587153..25587177 (25 bp)
TGCAGATGATCACTATGGCTCCACA
LOC_Os08g40630
Os.23927.1.S1_at--1144--851Chr08:25587139..25587163 (25 bp)
ATGGCTCCACATGTTCTGAATCAGA
LOC_Os08g40630
Os.23927.1.S1_at--180--2811Chr08:25587115..25587139 (25 bp)
AAGATCCATGTCCTTGAATCCAAGA
LOC_Os08g40630
Os.23927.1.S1_at--213--7951Chr08:25587067..25587091 (25 bp)
GGATATCCTCTGAGTACCCTGGTAA
LOC_Os08g40630
Os.23927.1.S1_at--631--9591Chr08:25587034..25587058 (25 bp)
TCATTCCTCTCGTTTACCGTGGAGA
LOC_Os08g40630
Os.23927.1.S1_at--529--6591Chr08:25586960..25586984 (25 bp)
GATTGCTACTGGACTAGCTCTTAGC
LOC_Os08g40630
Os.23927.1.S1_at--587--10071Chr08:25586896..25586920 (25 bp)
TATGTAGTAAGGCACCCCATGGGTT
LOC_Os08g40630
Os.23927.1.S1_at--403--2551Chr08:25586744..25586768 (25 bp)
AACTCGTTTTGCTGCACACCAATAG
LOC_Os08g40630
Os.23927.1.S1_at--763--251Chr08:25586723..25586747 (25 bp)
ATAGGTTGCCCCAACTTTGTCTGGA
LOC_Os08g40630
Os.23927.1.S1_at--46--10271Chr08:25586695..25586719 (25 bp)
TTTCTCCCTCTCTTAACTTTAGGTG
LOC_Os08g40630
Target Sequence 
AAAAGATCGCTACGACTTCTTGGTCAAGACCGGTTTGGACCCGGAACATGTGGTGCAGATGATCACTATGGCTCCACATG
TTCTGAATCAGAAGATCCATGTCCTTGAATCCAAGATATCCTTCCTTGTAAATGATATGGGATATCCTCTGAGTACCCTG
GTAATTTTCCCTTCATTCCTCTCGTTTACCGTGGAGAGAACCAAGCTTAGGTTTTTGATGTACAATTGGTTGTTGGAGAA
AGGAGTGATTGCTACTGGACTAGCTCTTAGCACTCTCCTAGCCACTGCAGACAAACATTTCGTAAAACGTTATGTAGTAA
GGCACCCCATGGGTTTAGAAGTCTGGGAGAAATTCAAGACAGAGGTAGCTTCAACAAAAAACAACACACCCTGTACTCCA
GATGATTAGCCTGATATGTTATATTTTTCTTTCTCATCAACTTACTTTTTTGCTGGCNAAGCAACTCGTTTTGCTGCACA
CCAATAGGTTGCCCCAACTTTGTCTGGAGTTTTTCTCCCTCTCTTAACTTTAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis