Browse Element(s) Details


Os.23971.1.S1_a_at

Description gb:AK067756.1
DB_XREF= gi:32977774
TID=Os.23971.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.23971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1066G12.11 (B1066G12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116N03, full insert sequence.
FL= gb:AK067756.1 gb:AK098860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1405011/11C2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13990NANA1+7834100..7834990hypothetical protein
LOC_Os01g14000NANA1+7841150..7841460hypothetical protein
LOC_Os01g14010Os.55091.1.S1_at8/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14010Os.19512.2.S1_x_at2/111+7844544..7846481Zinc finger, C2H2 type family protein, expressed
LOC_Os01g14020Os.8669.1.S1_at11/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14020OsAffx.14731.1.S1_at1/111+7849447..7852562Optic atrophy 3 protein containing protein, expressed
LOC_Os01g14030Os.30523.1.S1_at11/111+7853175..7854413expressed protein
LOC_Os01g14040Os.53640.1.S1_at9/111+7854630..7856863D-tyrosyl-tRNA deacylase family protein, expressed
LOC_Os01g14050Os.23971.2.S1_x_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14050Os.23971.1.S1_a_at11/111+7858862..7864577C2 domain-containing protein, putative, expressed
LOC_Os01g14060OsAffx.19201.1.S1_at2/111+7867592..7869015expressed protein
LOC_Os01g14070Os.26701.1.S1_s_at11/111+7873041..7875560expressed protein
LOC_Os01g14070Os.52301.1.S1_at10/111+7873041..7875560expressed protein
LOC_Os01g14080Os.36458.1.S1_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14080Os.36458.2.S1_x_at11/111+7876805..7879380lipase class 3, putative, expressed
LOC_Os01g14090Os.36194.1.S1_at11/111+7888343..7891521Kinesin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23971.1.S1_a_at--565--1291Chr01:7859409..7859433 (25 bp)
AGATGCGAAACCGACAAGGAGTGCG
LOC_Os01g14050
Os.23971.1.S1_a_at--529--7651Chr01:7859385..7859409 (25 bp)
GGGAGATGCAGAGAACTTGACAGAA
LOC_Os01g14050
Os.23971.1.S1_a_at--488--2371Chr01:7859337..7859361 (25 bp)
AAACGCAGGTGAGCCAGGTAGATCA
LOC_Os01g14050
Os.23971.1.S1_a_at--45--8151Chr01:7859268..7859292 (25 bp)
GGACAAGCTGTCTGATATCCCAGAG
LOC_Os01g14050
Os.23971.1.S1_a_at--799--8831Chr01:7859256..7859280 (25 bp)
TGATATCCCAGAGCAGACTGAAGCT
LOC_Os01g14050
Os.23971.1.S1_a_at--992--5711Chr01:7859241..7859265 (25 bp)
GACTGAAGCTCAAGCATCTGAGTTG
LOC_Os01g14050
Os.23971.1.S1_a_at--312--6611Chr01:7859220..7859244 (25 bp)
GTTGGTGAAAGAAGGGCCTGTTCCA
LOC_Os01g14050
Os.23971.1.S1_a_at--765--1051Chr01:7859191..7859215 (25 bp)
AGGGTAAACCTATTGATGGTCATCC
LOC_Os01g14050
Os.23971.1.S1_a_at--371--6251Chr01:7859177..7859201 (25 bp)
GATGGTCATCCGACAACTGAAAATG
LOC_Os01g14050
Os.23971.1.S1_a_at--617--5551Chr01:7859120..7859144 (25 bp)
GAAACGCAAACTAGTGCTCAGACTT
LOC_Os01g14050
Os.23971.1.S1_a_at--581--2531Chr01:7859112..7859136 (25 bp)
AACTAGTGCTCAGACTTCACAATGA
LOC_Os01g14050
Target Sequence 
AGATGCGAAACCGACAAGGAGTGCGGGAGATGCAGAGAACTTGACAGAAGATGTAGCCAAGGTGATGGAGAAAAACGCAG
GTGAGCCAGGTAGATCANTGACAAGCATACTGAGTAGAAAGATTTCCAGGAAGAAACCAGAGGACAAGCTGTCTGATATC
CCAGAGCAGACTGAAGCTCAAGCATCTGAGTTGGTGAAAGAAGGGCCTGTTCCAGTTGAGGGTAAACCTATTGATGGTCA
TCCGACAACTGAAAATGGCCATGGAGATGGTGCTTCAGGAGAAGCAGNTGAAACGCAAACTAGTGCTCAGACTTCACAAT
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23971.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis