Browse Element(s) Details


Os.24155.1.S1_at

Description gb:AK073165.1
DB_XREF= gi:32983188
TID=Os.24155.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24155 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0581F09.10 (P0581F09.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033023G08, full insert sequence.
FL= gb:AK073165.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1806011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18030NANA1+10085168..10086339hypothetical protein
LOC_Os01g18040Os.1709.1.S1_x_at5/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040Os.31497.2.S1_x_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18040OsAffx.19614.1.A1_at1/111+10087644..10094062retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g18050Os.7126.1.S1_at11/111+10096074..10099799Tubulin beta-4 chain, putative, expressed
LOC_Os01g18060Os.24155.1.S1_at11/111+10110690..10115776expressed protein
LOC_Os01g18070Os.6716.2.S1_at11/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.2.S1_x_at10/111+10116020..10120558expressed protein
LOC_Os01g18070Os.6716.1.S1_at9/111+10116020..10120558expressed protein
LOC_Os01g18080Os.6672.1.S1_at11/111+10130635..10132106transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g18090Os.43876.1.S1_at11/111+10133260..10133832expressed protein
LOC_Os01g18090Os.43876.2.S1_x_at11/111+10133260..10133832expressed protein
LOC_Os01g18100Os.55297.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed
LOC_Os01g18100Os.1715.1.S1_at11/111+10134175..10136937rhomboid family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24155.1.S1_at--376--1331Chr01:10111248..10111272 (25 bp)
AGAGGTGAACCTGCCCTGGGAACTT
LOC_Os01g18060
Os.24155.1.S1_at--1107--7951Chr01:10111181..10111205 (25 bp)
GGATCATCCTCATGGTATTCAATGC
LOC_Os01g18060
Os.24155.1.S1_at--560--7851Chr01:10111071..10111095 (25 bp)
GGTATCCACGGGTATGAACTCCATT
LOC_Os01g18060
Os.24155.1.S1_at--292--5471Chr01:10111056..10111080 (25 bp)
GAACTCCATTAAGTCTTCCACGGGT
LOC_Os01g18060
Os.24155.1.S1_at--865--10671Chr01:10111041..10111065 (25 bp)
TTCCACGGGTATGAGCACTCGGTGT
LOC_Os01g18060
Os.24155.1.S1_at--941--9111Chr01:10111013..10111037 (25 bp)
TGCTGTCTTGCAGTCTTGCTGATGA
LOC_Os01g18060
Os.24155.1.S1_at--612--6871Chr01:10110965..10110989 (25 bp)
GTTTGGCTGCGAATTCAACTCATTA
LOC_Os01g18060
Os.24155.1.S1_at--707--3131Chr01:10110924..10110948 (25 bp)
AATTTTCTCTGGTATGCTCCACGTG
LOC_Os01g18060
Os.24155.1.S1_at--84--4791Chr01:10110909..10110933 (25 bp)
GCTCCACGTGGATAGCAGCATTCCA
LOC_Os01g18060
Os.24155.1.S1_at--879--5651Chr01:10110874..10110898 (25 bp)
GACAGTCCTCAGATCATTGGATGCT
LOC_Os01g18060
Os.24155.1.S1_at--1139--4831Chr01:10110852..10110876 (25 bp)
GCTAACTTGGTATGCTTTTTCTGTC
LOC_Os01g18060
Target Sequence 
AGAGGTGAACCTGCCCTGGGAACTTACCCAAGGAAACAGTGATAGCATTCTTCTTTGATGTCATTTNNNNNNNNNNNNNN
NNNTGGATCATCCTCATGGTATTCAATGCAGATTTTTGCCAGAAAATATTGATTACAGTGGAGTTTTTGTGAGACCACAT
TTGTTTTGTAGCTCNGCTCTGGTACAGATTATATGGTATCCACGGGTATGAACTCCATTAAGTCTTCCACGGGTATGAGC
ACTCGGTGTGTGTGCTGTCTTGCAGTCTTGCTGATGAGGGGGAACTATTCAGTTAGCTATGTTTGGCTGCGAATTCAACT
CATTAATATGGTTTTGGAGATAATTTTCTCTGGTATGCTCCACGTGGATAGCAGCATTCCAACCACAACCTGACAGTCCT
CAGATCATTGGATGCTAACTTGGTATGCTTTTTCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis