Browse Element(s) Details


Os.24327.1.A1_at

Description gb:AK063425.1
DB_XREF= gi:32973443
TID=Os.24327.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-C11, full insert sequence.
FL= gb:AK063425.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g524101/11expressed protein
LOC_Os03g243391/11PWWP domain containing protein, expressed
LOC_Os07g172601/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed
LOC_Os02g52460Os.54394.1.S1_at11/112+32089453..32092841Zinc knuckle family protein, expressed
LOC_Os02g52470OsAffx.23623.1.S1_x_at7/112+32093970..32097106VEG136 protein, putative, expressed
LOC_Os02g52470OsAffx.23623.1.S1_at2/112+32093970..32097106VEG136 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0048497biological_processmaintenance of floral organ identity
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24327.1.A1_at--236--7253Chr03:1034930..1034954 (25 bp)
GTCCTTGGTCCTGATTTCTTCTTTT
NONE
Os.24327.1.A1_at--1019--896Chr07:10181690..10181709 (20 bp)
AGGCTTGCAGCCAGCTATGGTTTTA
LOC_Os07g17260
Os.24327.1.A1_at--190--1231NONE
AGTTCTAACAGAAGCCATCACGCAG
NONE
Os.24327.1.A1_at--1098--4491NONE
GCCGTCGTTGCATCGAGCTATCTAT
NONE
Os.24327.1.A1_at--963--10151NONE
TATCTATGGACTGGATGCGGCGGCT
NONE
Os.24327.1.A1_at--800--4111NONE
CGAAGTGATGGGTGCTAGCCTGCTA
NONE
Os.24327.1.A1_at--120--9991NONE
TAGCCTGCTAGGTTTCACTTTCACG
NONE
Os.24327.1.A1_at--1--3331NONE
CACTTTCACGTACTGGTGATCGGCT
NONE
Os.24327.1.A1_at--529--8851NONE
TGATCGGCTGGGTTGCACTCATGGC
NONE
Os.24327.1.A1_at--959--5091NONE
GCACTCATGGCCCAAATTCTTTTGG
NONE
Os.24327.1.A1_at--980--9551NONE
TCTTTTGGCTGGTGATGAGCTGTCA
NONE
Target Sequence 
GTCCTTGGTCCTGATTTCTTCTTTTTGCTTTTGGGTAGTTTCACCTTTTCAGGACAGCATCTACTCCTTTAGCATNTTTT
TCAGTTGCTAGGACAGCTGCGGTTAGTAGGACAGCAGCAATTAGCATCTCCTTTATGCCTCCTTTATGCTTTATTCAGTT
TGGATGCCCTCTAGGACAGCATCCCATTCAAATTTCGAATTTTTAGACTAGGAGGGTGCAGCAATAGGCTTGCAGCCAGC
TATGGTTTTATATATGTATCCAACCTCCCTTGGGAAGGTATGGCTTTGTGTTTTGTGAATGAAGAAAACCAGAAAATTGC
CCCATCTCGAGTGCCATCCTCTTCTCAATNAGAGTAACCATTGAAGTTCTAACAGAAGCCATCACGCAGCGCCGCCGTCG
TTGCATCGAGCTATCTATGGACTGGATGCGGCGGCTGGGGATGGGGACGAATGATGAGGACGAAGTGATGGGTGCTAGCC
TGCTAGGTTTCACTTTCACGTACTGGTGATCGGCTGGGTTGCACTCATGGCCCAAATTCTTTTGGCTGGTGATGAGCTGT
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24327.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis