Browse Element(s) Details


Os.24616.1.S2_at

Description gb:AK064433.1
DB_XREF= gi:32974451
TID=Os.24616.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24616 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D05, full insert sequence.
FL= gb:AK063594.1 gb:AK064433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4631010/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46310OsAffx.14296.1.S1_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S1_s_at11/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46310Os.24616.1.S2_at10/114+27225370..27240995HEAT repeat family protein, expressed
LOC_Os04g46320Os.50904.1.S1_at11/114+27241763..27244397Protein kinase domain containing protein, expressed
LOC_Os04g46330Os.51735.1.S1_s_at11/114+27247252..27248767expressed protein
LOC_Os04g46330Os.51735.1.S1_at10/114+27247252..27248767expressed protein
LOC_Os04g46340OsAffx.4106.1.S1_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.4106.1.S1_x_at11/114+27252261..27254789hypothetical protein
LOC_Os04g46340OsAffx.32242.1.S1_at1/114+27252261..27254789hypothetical protein
LOC_Os04g46350OsAffx.4107.1.S1_s_at11/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.50599.1.S1_x_at10/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed
LOC_Os04g46350Os.20628.1.S1_at1/114+27258493..27260624Homeobox associated leucine zipper family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24616.1.S2_at--693--6911Chr04:27240413..27240437 (25 bp)
GTATGGCAATATCACCGACAGGTAT
LOC_Os04g46310
Os.24616.1.S2_at--688--1011Chr04:27240432..27240455 (24 bp)
AGGTATCACGTGTCTGCTAAGCGGG
LOC_Os04g46310
Os.24616.1.S2_at--607--2671NONE
AAGCGGGTGGCCATGTATACGTACA
NONE
Os.24616.1.S2_at--1013--7671Chr04:27240562..27240586 (25 bp)
GGGTTTTGCACCATGCACGATGGTT
LOC_Os04g46310
Os.24616.1.S2_at--634--10571Chr04:27240661..27240685 (25 bp)
TTCTAGCCTCTAGTGGAATCCTGGA
LOC_Os04g46310
Os.24616.1.S2_at--1076--91Chr04:27240695..27240719 (25 bp)
ATTCGCGTTTTATCATCAATGGCTG
LOC_Os04g46310
Os.24616.1.S2_at--84--5211Chr04:27240761..27240785 (25 bp)
GAATTGTCGTCGCTATATCGGTCAC
LOC_Os04g46310
Os.24616.1.S2_at--1052--491Chr04:27240777..27240801 (25 bp)
ATCGGTCACGCGGAATCTATTTCTG
LOC_Os04g46310
Os.24616.1.S2_at--28--3271Chr04:27240848..27240872 (25 bp)
CAACTACTCAGTACACATCTCGGGT
LOC_Os04g46310
Os.24616.1.S2_at--375--8951Chr04:27240874..27240898 (25 bp)
TGACATGTCTCTTTCACGTACTGAA
LOC_Os04g46310
Os.24616.1.S2_at--374--6511Chr04:27240908..27240932 (25 bp)
GATATATGGACTCACGCTCTCAAGT
LOC_Os04g46310
Target Sequence 
GTATGGCAATATCACCGACAGGTATCACGTGTCTGCTAAGCGGGTGGCCATGTATACGTACAGTAAAATCAAGTTGTGAA
CTCCAATTAGGAATTAAGGATACGTCAAATTTGTAGGCTGTACTACTGCAGAGTGCAGACTGACTTTTGGGGTTTTGCAC
CATGCACGATGGTTAGCATGTGCCAGGAACAACACAGCACATGGAGAAGTTTTAAGGCTTCGGAAGTCTACTTTTTTTCT
TTATCTAGTTCTAGCCTCTAGTGGAATCCTGGAAGGTCAGTAATTCGCGTTTTATCATCAATGGCTGTGTACGTGATGGT
GATGTGTACGTGATGGTGATGTGTATGTGAATTGTCGTCGCTATATCGGTCACGCGGAATCTATTTCTGGGTGTATCAGA
AGCCACATGGTGGTTGTGGTGGACTGGTGGTAAGACAACTACTCAGTACACATCTCGGGTGTGACATGTCTCTTTCACGT
ACTGAACTTTGAACAGATATATGGACTCACGCTCTCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24616.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis