Browse Element(s) Details


Os.24683.1.A1_s_at

Description gb:CA762386
DB_XREF= gi:25806425
DB_XREF=BR060005B20C05.ab1
CLONE=BR060005B20C05.ab1
TID=Os.24683.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24683 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_197498.1 (A.thaliana) lipophosphoglycan biosynthetic protein - like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1452011/11integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g14490OsAffx.17691.1.S1_at11/119+8563277..8571068NB-ARC domain containing protein, expressed
LOC_Os09g14500Os.45957.4.S1_x_at6/119+8571670..8576475retrotransposon protein, putative, unclassified
LOC_Os09g14500Os.45957.3.S1_x_at2/119+8571670..8576475retrotransposon protein, putative, unclassified
LOC_Os09g14510Os.26699.1.S1_a_at11/119+8584970..8588947Peroxin-3 family protein, expressed
LOC_Os09g14520Os.24683.1.A1_s_at11/119+8589541..8591392integral membrane family protein, putative, expressed
LOC_Os09g14530OsAffx.27789.1.S1_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.3.S1_s_at11/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14530OsAffx.27789.2.S1_x_at7/119+8593720..8596309hAT family dimerisation domain containing protein
LOC_Os09g14540Os.25400.1.S1_at11/119+8602013..8608483Protein phosphatase 2C containing protein, expressed
LOC_Os09g14550OsAffx.6271.1.S1_at11/119+8612520..8617110Ataxin-2 C-terminal region family protein

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Gene Ontology Classification
GO idTypeName
GO:0015784biological_processGDP-mannose transport
GO:0005794cellular_componentGolgi apparatus
GO:0016020cellular_componentmembrane
GO:0005338molecular_functionnucleotide-sugar transporter activity
GO:0005458molecular_functionGDP-mannose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24683.1.A1_s_at--607--7471Chr09:8590128..8590152 (25 bp)
GTGTGTTTGGATTGCTCATCAGCTT
LOC_Os09g14520
Os.24683.1.A1_s_at--519--6831Chr09:8590098..8590122 (25 bp)
GTTTCGCGACGAGGAAAGCTATCTC
LOC_Os09g14520
Os.24683.1.A1_s_at--196--2831Chr09:8590039..8590063 (25 bp)
AAGTTCCTCACCGTGGCGATCAATG
LOC_Os09g14520
Os.24683.1.A1_s_at--220--10791Chr09:8590012..8590036 (25 bp)
TTGATCTGGGACAAGCACTCGAGCC
LOC_Os09g14520
Os.24683.1.A1_s_at--963--5871Chr09:8589992..8590016 (25 bp)
GAGCCCGTTCGGTTTGATCTGCTTG
LOC_Os09g14520
Os.24683.1.A1_s_at--639--1731Chr09:8589961..8589985 (25 bp)
ACCATTGCTGGTGGAGTTCTCTACC
LOC_Os09g14520
Os.24683.1.A1_s_at--730--2751Chr09:8589922..8589946 (25 bp)
AAGAAAGGAATTACCGCGCCGCAGC
LOC_Os09g14520
Os.24683.1.A1_s_at--82--4571Chr09:8589907..8589931 (25 bp)
GCGCCGCAGCATGAACCAGAATCAT
LOC_Os09g14520
Os.24683.1.A1_s_at--596--7891Chr09:8589824..8589848 (25 bp)
GGTTCCAACTTCTAAAAGCTCCAAT
LOC_Os09g14520
Os.24683.1.A1_s_at--77--4911Chr09:8589799..8589823 (25 bp)
GCTTGACTTGCATGCTTAGATTTAC
LOC_Os09g14520
Os.24683.1.A1_s_at--617--7431Chr09:8589740..8589764 (25 bp)
GTGTAGTGTGAATCCCTGCAACAAA
LOC_Os09g14520
Target Sequence 
GTGTGTTTGGATTGCTCATCAGCTTNTTNGGTTTCGCGACGAGGAAAGCTATCTCAGCANCAGCNTTTACAGTGACCGGG
GTAGTCAACAAGTTCCTCACCGTGGCGATCAATGTATTGATCTGGGACAAGCACTCGAGCCCGTTCGGTTTGATCTGCTT
GCTCTTCACCATTGCTGGTGGAGTTCTCTACCAGCAATCGGTTACAAAGAAAGGAATTACCGCGCCGCAGCATGAACCAG
AATCATCTGAGCAAACCAAAGATGACAATGAGGGCATTGAGCTTGATGAGGAGAAACAAAGTTTGGTTCCAACTTCTAAA
AGCTCCAATGCTTGACTTGCATGCTTAGATTTACATTCAGAGATCCTTTAATCTTGAAATAGGCTTTTGTGTAGTGTGAA
TCCCTGCAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24683.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis