Browse Element(s) Details


Os.24759.1.A1_at

Description gb:AK070344.1
DB_XREF= gi:32980368
TID=Os.24759.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24759 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051L23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051L23, full insert sequence.
FL= gb:AK070344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2935010/11phagocytosis and cell motility protein ELMO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29320OsAffx.442.1.S1_x_at4/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.442.1.S1_at2/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29320OsAffx.30226.2.S1_x_at1/1111+16498955..16502054retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g29330OsAffx.19066.1.S1_at11/1111+16505327..16505782hypothetical protein
LOC_Os11g29340Os.49189.1.S1_at10/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29340Os.16167.1.S1_at3/1111+16507642..16513433SAP domain containing protein, expressed
LOC_Os11g29350Os.24759.1.A1_at10/1111+16525649..16529877phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os11g29360OsAffx.7247.1.S1_at11/1111+16530025..16531461pentatricopeptide repeat-containing protein, putative
LOC_Os11g29370Os.11937.1.S1_at11/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370Os.21038.1.S1_s_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29370OsAffx.28452.1.S1_x_at1/1111+16534164..16541435haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g29380Os.12974.1.S1_at11/1111+16544222..16550186DNA replication licensing factor MCM2, putative, expressed
LOC_Os11g29390Os.8307.1.A1_at8/1111+16551298..16558721Bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24759.1.A1_at--1008--3991Chr11:16529146..16529170 (25 bp)
CGTTTGTTCGAGCTGTTTTTATCCA
LOC_Os11g29350
Os.24759.1.A1_at--418--4651Chr11:16529298..16529322 (25 bp)
GCGTCGCGTTCGTTGTTATGGACAA
LOC_Os11g29350
Os.24759.1.A1_at--374--5451Chr11:16529338..16529362 (25 bp)
GAACGCCTCCTACATGGACTTCAAT
LOC_Os11g29350
Os.24759.1.A1_at--679--5371Chr11:16529521..16529545 (25 bp)
GAAGACATGCCGTCATACAGCCTGC
LOC_Os11g29350
Os.24759.1.A1_at--166--3211Chr11:16529589..16529613 (25 bp)
CAATGGTTCTGACCTCTGAGTGTAT
LOC_Os11g29350
Os.24759.1.A1_at--1101--2951Chr11:16529669..16529693 (25 bp)
AATGGCCTCCTATTGTCATGCTGAA
LOC_Os11g29350
Os.24759.1.A1_at--1036--611Chr11:16529686..16529710 (25 bp)
ATGCTGAACTTGTCCCACTGTAAAC
LOC_Os11g29350
Os.24759.1.A1_at--389--7051Chr11:16529705..16529729 (25 bp)
GTAAACAACTCATCTGGGCATCACC
LOC_Os11g29350
Os.24759.1.A1_at--933--3051Chr11:16529774..16529798 (25 bp)
AATCTGTCATATTTTACCCCATGGA
LOC_Os11g29350
Os.24759.1.A1_at--110--2271Chr11:16529826..16529850 (25 bp)
AAATCAACTTGCAACCTCTGGTGAA
LOC_Os11g29350
Os.24759.1.A1_at--1131--7731NONE
GGTGTTCAATGGATCCTCATTTCCT
NONE
Target Sequence 
CGTTTGTTCGAGCTGTTTTTATCCAAATGCTGTCAGAGGATGAGTGGGCATTTGATCTCCTNTANTGCGTCGCGTTCGTT
GTTATGGACAAGCAGTGGCTCGACAAGAACGCCTCCTACATGGACTTCAATGAGATACTGAAGTCGACACGGACACAGCT
GGAGAGGGAGCTTCTGCTGGATGATGTGATGCGGATCGAAGACATGCCGTCATACAGCCTGCTNTGCTAGTAGTGGCCAT
ACTGGTTGAACAATCATGATTGAGTCAATGGTTCTGACCTCTGAGTGTATAGCCCCCTCCCTTTTGTTGATTCCAGGGAA
GGGAATTTTTGATGGCATGTAGAGCAATGGCCTCCTATTGTCATGCTGAACTTGTCCCACTGTAAACAACTCATCTGGGC
ATCACCNCAATGAATTAGAATTGCTAGCATCCAATGTCAAAGCTGGTGTTAATCTGTCATATTTTACCCCATGGATGTAA
CAACAGAATCAACGAGTGGGTAAAATCAACTTGCAACCTCTGGTGAATGGTGTTCAATGGATCCTCATTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24759.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis