Browse Element(s) Details


Os.24766.1.A1_s_at

Description gb:CR290713
DB_XREF= gi:44677279
DB_XREF=CR290713
CLONE=p628c03p3
TID=Os.24766.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24766 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565418.1 (A.thaliana) putative mitotic control protein dis3 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0371011/11RNB-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03660Os.2691.1.S1_a_at11/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03660Os.54519.1.S1_at1/113+1603441..1607849Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os03g03670Os.4324.1.S1_at11/113+1608507..1610088expressed protein
LOC_Os03g03680OsAffx.30403.1.S1_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03680OsAffx.30403.1.S1_s_at11/113+1610499..1616535major facilitator superfamily protein, expressed
LOC_Os03g03690Os.53684.1.A1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690OsAffx.12724.1.S1_at10/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03690Os.10405.1.S1_at1/113+1619997..1623371Phospho-ethanolamine N-methyltransferase family protein, expressed
LOC_Os03g03700Os.4327.1.S1_at11/113+1623489..1627107MLO protein homolog 1, putative, expressed
LOC_Os03g03710Os.24766.1.A1_s_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710Os.24766.1.A1_at11/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03710OsAffx.3125.1.S1_at10/113+1631539..1639785RNB-like protein, expressed
LOC_Os03g03720Os.4329.1.S1_at11/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03720Os.10732.1.S1_s_at1/113+1640515..1643917Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
LOC_Os03g03730OsAffx.24955.1.S1_s_at11/113+1645808..1647611regulatory protein, putative, expressed
LOC_Os03g03740NANA3+1648147..1648488retrotransposon protein, putative, unclassified
LOC_Os03g03750OsAffx.12725.1.S1_at8/113+1649370..1649778hypothetical protein
LOC_Os03g03760OsAffx.12726.1.S1_at11/113+1651176..1656154myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0004540molecular_functionribonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24766.1.A1_s_at--748--3431Chr03:1632452..1632476 (25 bp)
CAGTTGAGCTTCATACCCTCATATA
LOC_Os03g03710
Os.24766.1.A1_s_at--171--9951Chr03:1632439..1632463 (25 bp)
TACCCTCATATATTTCAGGACAAGG
LOC_Os03g03710
Os.24766.1.A1_s_at--1124--6231Chr03:1632323..1632347 (25 bp)
GATGGACACTGAAGCTAGAATTGTA
LOC_Os03g03710
Os.24766.1.A1_s_at--75--831Chr03:1632285..1632309 (25 bp)
ATGGTTTCATAGTATTTGTCCCAAA
LOC_Os03g03710
Os.24766.1.A1_s_at--730--11Chr03:1632003..1632027 (25 bp)
ATAGAAGGGCCCATCTACCTTACTC
LOC_Os03g03710
Os.24766.1.A1_s_at--805--4311Chr03:1631993..1632017 (25 bp)
CCATCTACCTTACTCCAAAGGGAGA
LOC_Os03g03710
Os.24766.1.A1_s_at--206--3431Chr03:1631934..1631958 (25 bp)
CAGAGAGTAACCAAGCCCGGGACAA
LOC_Os03g03710
Os.24766.1.A1_s_at--850--4531Chr03:1631920..1631944 (25 bp)
GCCCGGGACAAACGTCAGTTACGCT
LOC_Os03g03710
Os.24766.1.A1_s_at--200--2391Chr03:1631911..1631935 (25 bp)
AAACGTCAGTTACGCTGTCCTGCAG
LOC_Os03g03710
Os.24766.1.A1_s_at--842--832Chr08:10339276..10339347 (24 bp)
ATGGAGGTGGTTGAGCCTCAGCCTC
NONE
Os.24766.1.A1_s_at--222--3291Chr03:1631840..1631864 (25 bp)
CAAAGTTGCAACTCACCCTGATATG
LOC_Os03g03710
Target Sequence 
CAGTTGAGCTTCATACCCTCATATATTTCAGGACAAGGCCGATGGACACTGAAGCTAGAATTGTAAAGATCAAGGCAAAT
GGTTTCATAGTATTTGTCCCAAAGTTTAGCATAGAAGGGCCCATCTACCTTACTCCAAAGGGAGACAAGGGGGGTGATTG
GGTAGTAGATGAGGTGCACCAGAGAGTAACCAAGCCCGGGACAAACGTCAGTTACGCTGTCCTGCAGANCGTTATGATTC
ATATGGAGGTGGTTGAGCCTCAGCCTCACCGCCCAAAGTTGCAACTCACCCTGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24766.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis