Browse Element(s) Details


Os.24872.1.S1_at

Description gb:AK101033.1
DB_XREF= gi:32986242
TID=Os.24872.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative beclin 1 (P0019E03.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150N19, full insert sequence.
FL= gb:AK101033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4892011/11Autophagy protein Apg6 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48874Os.27632.1.S1_at10/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48874OsAffx.2276.1.S1_at9/111+28359713..28378674condensation domain-containing protein, putative, expressed
LOC_Os01g48900Os.41711.1.S1_at11/111+28382038..28387289Dynamin-related protein 1A, putative, expressed
LOC_Os01g48910Os.22710.1.S1_a_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48910Os.22710.2.S1_x_at11/111+28387258..28394007AMP-binding enzyme family protein, expressed
LOC_Os01g48920Os.24872.1.S1_at11/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48920Os.24872.2.S1_at3/111+28397546..28403276Autophagy protein Apg6 containing protein, expressed
LOC_Os01g48930Os.10135.1.S1_at11/111+28407240..28410229expressed protein
LOC_Os01g48940OsAffx.23719.1.S1_at11/111+28411109..28413257expressed protein
LOC_Os01g48940Os.46029.1.A1_at11/111+28411109..28413257expressed protein
LOC_Os01g48950Os.35583.1.S1_at10/111+28415247..28415951expressed protein
LOC_Os01g48960Os.12738.1.S1_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed
LOC_Os01g48960Os.12738.1.S2_a_at11/111+28418058..28429778Glutamate synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006914biological_processautophagy
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24872.1.S1_at--508--1732Chr03:8350063..8350082 (20 bp)
ACCATCTGGATCTTTGTGTGCAGCG
NONE
Os.24872.1.S1_at--274--7972Chr03:8350065..8350089 (25 bp)
GGATCTTTGTGTGCAGCGCAATCAT
NONE
Os.24872.1.S1_at--260--7472Chr03:8350073..8350097 (25 bp)
GTGTGCAGCGCAATCATCTAAGAGA
NONE
Os.24872.1.S1_at--1010--2771Chr01:28397954..28397978 (25 bp)
AAGAGATGATGATGTCACTGACCTA
LOC_Os01g48920
Os.24872.1.S1_at--857--7091Chr01:28397941..28397965 (25 bp)
GTCACTGACCTATTAAGGTGGTGTT
LOC_Os01g48920
Os.24872.1.S1_at--411--7811Chr01:28397596..28397620 (25 bp)
GGTCTAAACTGATTGTAGCCGCACA
LOC_Os01g48920
Os.24872.1.S1_at--231--2391Chr01:28397591..28397615 (25 bp)
AAACTGATTGTAGCCGCACATTGAA
LOC_Os01g48920
Os.24872.1.S1_at--1121--6591Chr01:28397586..28397610 (25 bp)
GATTGTAGCCGCACATTGAACAGAT
LOC_Os01g48920
Os.24872.1.S1_at--541--6971Chr01:28397582..28397606 (25 bp)
GTAGCCGCACATTGAACAGATAGTA
LOC_Os01g48920
Os.24872.1.S1_at--1072--5491Chr01:28397569..28397593 (25 bp)
GAACAGATAGTAGCATTGACGTGAC
LOC_Os01g48920
Os.24872.1.S1_at--455--291Chr01:28397563..28397587 (25 bp)
ATAGTAGCATTGACGTGACATATTC
LOC_Os01g48920
Target Sequence 
ACCATCTGGATCTTTGTGTGCAGCGCAATCATCTAAGAGATGATGATGTCACTGACCTATTAAGGTGGTGTTTGGATCCA
GGGACTTAACTTTAGTCCCTATATTTAGACACTAATTTAGAGTATTAGATATAGACTACTTACAAAACTAATTACATAAA
TGAAAGCTAATTCGCGAGACAAATTTTTAAGCCTAATTAATCCATAATTAGAGAATGTTTACTGTAGCATCACATAGGCT
AATTATGGATTAATTAGACTCAATAGATTCGTCTCGCGAATTAGTCTAAGATTATGAATGGGTTTTATTAATAGTCTACG
TTTAATATTTGTAATTAGTGTCCAAACATCCAATGTGATAAGGACTTGAAAGTTTTAGTCCCATCTAAACATGGTCTAAA
CTGATTGTAGCCGCACATTGAACAGATAGTAGCATTGACGTGACATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis