Browse Element(s) Details


Os.24882.1.S1_s_at

Description gb:CB097171
DB_XREF= gi:27921363
DB_XREF=AF53-Rpf_13_F15_T7_052.ab1
CLONE=C0004743
TID=Os.24882.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24882 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:Q9LIP6 (A.thaliana) C72V_ARATH Cytochrome P450 71B34
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0927011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09240Os.54895.1.S1_x_at11/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09240Os.54895.1.S1_at10/112+4754170..4756280Cytochrome P450 family protein, expressed
LOC_Os02g09250Os.16786.1.S1_at11/112+4765148..4767212Cytochrome P450 family protein, expressed
LOC_Os02g09260Os.53919.1.S1_at1/112+4768852..4771021Cytochrome P450 family protein
LOC_Os02g09270Os.24882.1.S1_s_at11/112+4774333..4776354Cytochrome P450 family protein, expressed
LOC_Os02g09280OsAffx.21870.2.S1_x_at3/112+4779347..4780268hypothetical protein
LOC_Os02g09280OsAffx.21870.3.S1_x_at1/112+4779347..4780268hypothetical protein
LOC_Os02g09290OsAffx.24172.1.S1_at11/112+4785232..4787038Cytochrome P450 71D10, putative, expressed
LOC_Os02g09300OsAffx.30486.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09300OsAffx.9762.1.S1_at1/112+4787844..4789274hypothetical protein
LOC_Os02g09310OsAffx.24172.2.S1_at11/112+4791454..4793238Cytochrome P450 family protein
LOC_Os02g09320OsAffx.24173.1.S1_at11/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09320Os.52428.1.S1_x_at1/112+4796079..4797934Cytochrome P450 family protein
LOC_Os02g09330OsAffx.11952.1.S1_at10/112+4800371..4802379hypothetical protein
LOC_Os02g09330OsAffx.28081.1.S1_x_at1/112+4800371..4802379hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24882.1.S1_s_at--997--2551Chr02:4775764..4775788 (25 bp)
AACGGTAACCGAAGACGATCTCACA
LOC_Os02g09270
Os.24882.1.S1_s_at--126--8051Chr02:4775818..4775842 (25 bp)
GGAGACGCTTAGGTTACATCCCGTG
LOC_Os02g09270
Os.24882.1.S1_s_at--566--9151Chr02:4775844..4775868 (25 bp)
TGCCCTTACTTCTCCCAAGAGAGTG
LOC_Os02g09270
Os.24882.1.S1_s_at--145--9711Chr02:4776015..4776039 (25 bp)
TCAAAGGTACAGACTTCGAGTTCGT
LOC_Os02g09270
Os.24882.1.S1_s_at--1067--991Chr02:4776059..4776083 (25 bp)
AGGATCTGTCCTGGCATAGCATTTG
LOC_Os02g09270
Os.24882.1.S1_s_at--149--8291Chr02:4776071..4776095 (25 bp)
GGCATAGCATTTGCACAGTCCAATA
LOC_Os02g09270
Os.24882.1.S1_s_at--413--1551Chr02:4776099..4776123 (25 bp)
AGCTTGTGCTTGCTACACTCCTATA
LOC_Os02g09270
Os.24882.1.S1_s_at--699--1551Chr02:4776138..4776162 (25 bp)
AGCTTCCTAGTGGTATGTCGCCTGA
LOC_Os02g09270
Os.24882.1.S1_s_at--365--6411Chr02:4776212..4776236 (25 bp)
GATCTTTACCTACATCCAACAGTTT
LOC_Os02g09270
Os.24882.1.S1_s_at--473--2491Chr02:4776229..4776253 (25 bp)
AACAGTTTGTGTGCCTCTGTAGGCC
LOC_Os02g09270
Os.24882.1.S1_s_at--961--8731Chr02:4776246..4776270 (25 bp)
TGTAGGCCGTAGTCTCTTTTGAAGT
LOC_Os02g09270
Target Sequence 
AACGGTAACCGAAGACGATCTCACAAATCTAAAGTACCTGAAGCTTGTCATCAAGGAGACGCTTAGGTTACATCCCGTGC
TGCCCTTACTTCTCCCAAGAGAGTGCCAAGAAGCATGCAATGTCATCGGGTACGACGTCCCCAAATACACTACCGTTTTT
ATAAACGTGTGGGCAATCAACAGGGACCCCAAATATTGGGACATGGCCAAGATGTTTAAGCCAGAACGCTTTGACAATAG
CATGATTGACTTCAAAGGTACAGACTTCGAGTTCGTGCCATTTGGGGCTGGAAGAAGGATCTGTCCTGGCATAGCATTTG
CACAGTCCAATATGGAGCTTGTGCTTGCTACACTCCTATACCACTTTGACTGGGAGCTTCCTAGTGGTATGTCGCCTGAA
GAGTTAGATATGACTGAGGACATGGGACTATCTGTCCGAAGGAAGAATGATCTTTACCTACATCCAACAGTTTGTGTGCC
TCTGTAGGCCGTAGTCTCTTTTGAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24882.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis