Browse Element(s) Details


Os.24990.1.S1_at

Description gb:AK103392.1
DB_XREF= gi:32988601
TID=Os.24990.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033127M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033127M05, full insert sequence.
FL= gb:AK061432.1 gb:AK103392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1036010/11surfeit 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10310OsAffx.3185.1.S1_x_at10/113+5236249..5238624expressed protein
LOC_Os03g10310OsAffx.3185.1.S1_at10/113+5236249..5238624expressed protein
LOC_Os03g10320Os.13596.1.S1_at10/113+5240825..5242784expressed protein
LOC_Os03g10330NANA3+5247261..5248408hypothetical protein
LOC_Os03g10334Os.54913.1.S1_at11/113+5250361..5251444expressed protein
LOC_Os03g10340Os.5282.1.S1_a_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.39003.1.S1_s_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S1_at11/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10340Os.5282.1.S2_at10/113+5254044..525652440S ribosomal protein S3a, putative, expressed
LOC_Os03g10350Os.24748.1.A1_at11/113+5256576..5259912TPR Domain containing protein, expressed
LOC_Os03g10360Os.24990.1.S1_at10/113+5262574..5265959surfeit 1, putative, expressed
LOC_Os03g10370Os.9284.1.S1_at10/113+5266711..5269680small GTP-binding protein domain containing protein, expressed
LOC_Os03g10380NANA3+5270973..5271187hypothetical protein
LOC_Os03g10390Os.9841.1.S1_at11/113+5273638..5276132expressed protein
LOC_Os03g10400Os.26947.1.S1_at11/113+5276451..5280510peptidylprolyl isomerase, putative, expressed
LOC_Os03g10410Os.6229.1.S1_at11/113+5281525..5283878expressed protein
LOC_Os03g10420Os.54045.1.S1_at11/113+5284057..5286727salt-inducible protein, putative, expressed
LOC_Os03g10430OsAffx.20052.2.S1_at11/113+5289234..5290224hypothetical protein
LOC_Os03g10430Os.51177.1.S1_at2/113+5289234..5290224hypothetical protein
LOC_Os03g10430OsAffx.20052.1.S1_x_at1/113+5289234..5290224hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008535biological_processcytochrome c oxidase complex assembly
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24990.1.S1_at--770--2191Chr03:5263939..5263963 (25 bp)
ACAAATCCTTATCCTGTTCCAAAAG
LOC_Os03g10360
Os.24990.1.S1_at--563--6771NONE
GTTACATGGTACACTCTTTCTGCTG
NONE
Os.24990.1.S1_at--808--4771Chr03:5263001..5263025 (25 bp)
GCTGCTGTGACTTTCATGGCTGCAA
LOC_Os03g10360
Os.24990.1.S1_at--49--1631Chr03:5262946..5262970 (25 bp)
AGCGGAACATAAACCTGTCTCCTGC
LOC_Os03g10360
Os.24990.1.S1_at--584--7171Chr03:5262930..5262954 (25 bp)
GTCTCCTGCATCTTGTACTTATTTA
LOC_Os03g10360
Os.24990.1.S1_at--122--9811Chr03:5262865..5262889 (25 bp)
TAACCTGAGTACTGCATCTTCATCT
LOC_Os03g10360
Os.24990.1.S1_at--734--4971Chr03:5262852..5262876 (25 bp)
GCATCTTCATCTCTCAGGCAATGAT
LOC_Os03g10360
Os.24990.1.S1_at--615--1191Chr03:5262824..5262848 (25 bp)
AGTAGTCTTGCCACATTTGATATGA
LOC_Os03g10360
Os.24990.1.S1_at--248--791Chr03:5262788..5262812 (25 bp)
ATGGGCATCTCGTAGTTGAACTCAG
LOC_Os03g10360
Os.24990.1.S1_at--1023--10011Chr03:5262745..5262769 (25 bp)
TAGCAGCTTCTGATATCCTTGATTC
LOC_Os03g10360
Os.24990.1.S1_at--869--6751Chr03:5262648..5262672 (25 bp)
GTTCAATGAGCTAGTCGTCCACGAG
LOC_Os03g10360
Target Sequence 
ACAAATCCTTATCCTGTTCCAAAAGATGTCAGTACTTTGATTCATCACTCAGTGATGCCACATGACCATCTAAAATACAC
CGTTACATGGTACACTCTTTCTGCTGCTGTGACTTTCATGGCTGCAAAGCGGATAAAGGCAAAGAAGGTTAAGTTATAGC
GGAACATAAACCTGTCTCCTGCATCTTGTACTTATTTATGAAGCTCAAGTTCCCGCTGCTTCAGAAAGAGATGTTCGATA
ACCTGAGTACTGCATCTTCATCTCTCAGGCAATGATCAAAGTAGTCTTGCCACATTTGATATGATGTGCATCCATATGGG
CATCTCGTAGTTGAACTCAGAGGATAGAAAAGTTTTGTTAGCAGCTTCTGATATCCTTGATTCTTTTGTTACGGAACTTA
CATTGAGGAAACAACGTAGACATTGTTATTTGTTTCTATTCTTTGTAGTTTTTTTGTTCAATGAGCTAGTCGTCCACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis