Browse Element(s) Details


Os.25007.1.S1_a_at

Description gb:AK121997.1
DB_XREF= gi:37991620
TID=Os.25007.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004D12.25 (P0004D12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033110E03, full insert sequence.
FL= gb:AK103107.1 gb:AK121061.1 gb:AK121997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6876011/11WW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25007.1.S1_a_at--473--591Chr01:40270677..40270701 (25 bp)
ATGCCTTTCCCTAACATGGATGCTG
LOC_Os01g68760
Os.25007.1.S1_a_at--156--3391Chr01:40270631..40270655 (25 bp)
CAGCTCATGAAGTTTCCAACCATAA
LOC_Os01g68760
Os.25007.1.S1_a_at--987--2631Chr01:40270614..40270638 (25 bp)
AACCATAATGATAGTGCAGCAGACA
LOC_Os01g68760
Os.25007.1.S1_a_at--1033--2071Chr01:40270592..40270616 (25 bp)
ACATTGAATCTGCTGTCCAAGAGGC
LOC_Os01g68760
Os.25007.1.S1_a_at--878--2331Chr01:40270342..40270366 (25 bp)
AAAGCAACAATTGAGCCTACGCAGT
LOC_Os01g68760
Os.25007.1.S1_a_at--317--4451Chr01:40270328..40270352 (25 bp)
GCCTACGCAGTATGGAGAAGACCTC
LOC_Os01g68760
Os.25007.1.S1_a_at--697--5931Chr01:40270168..40270192 (25 bp)
GAGCACTTACTAAAAATGACAGCCG
LOC_Os01g68760
Os.25007.1.S1_a_at--1039--671Chr01:40270153..40270177 (25 bp)
ATGACAGCCGAGCATCGTGCAGAGA
LOC_Os01g68760
Os.25007.1.S1_a_at--960--5411Chr01:40270113..40270136 (24 bp)
GAAGCCGCTTCATGCAGATAATGGC
LOC_Os01g68760
Os.25007.1.S1_a_at--358--31Chr01:40269373..40269397 (25 bp)
ATTGGCAATGGCTATGGTGTACCAG
LOC_Os01g68760
Os.25007.1.S1_a_at--1122--2431Chr01:40269195..40269219 (25 bp)
AAAAGGTGCCGATGATCTCCCTGAA
LOC_Os01g68760
Target Sequence 
ATGCCTTTCCCTAACATGGATGCTGGGGGTGCACAATCAAATCAGACAGCTCATGAAGTTTCCAACCATAATGATAGTGC
AGCAGACATTGAATCTGCTGTCCAAGAGGCTGTTCTTCGTGAACAGGACATTGAGACTCAGCAAGTCATACAAAATCAAA
GACAAGCAAAAGCAACAATTGAGCCTACGCAGTATGGAGAAGACCTCCTTTCAAACCGCCGCAACCCTAATGCATTGAAG
GAGCACTTACTAAAAATGACAGCCGAGCATCGTGCAGAGATGGCAAACAAAAGGGGGAAGCCGCTTCATGCAGATAATGG
CAATGTTGAAATTGGCAATGGCTATGGTGTACCAGGAGGGGGTGCTTATTATGCTGCAAACATGTCAAGTGGTCAAATGA
ATAAACCCAAGGATATAGCTGATAAAGCAAAAGGTGCCGATGATCTCCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25007.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis