Browse Element(s) Details


Os.25007.3.S1_x_at

Description gb:NM_189941.1
DB_XREF= gi:34906965
GEN=P0004D12.24
TID=Os.25007.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0004D12.25 (P0004D12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0004D12.24 (P0004D12.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6876011/11WW domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68710Os.7639.1.S1_at11/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68710Os.55103.1.S1_x_at2/111+40240756..40243343FK506-binding protein 2-1 precursor, putative, expressed
LOC_Os01g68720Os.19350.1.S1_at7/111+40245799..40247149expressed protein
LOC_Os01g68730Os.7281.1.S1_at11/111+40249042..40250617expressed protein
LOC_Os01g68740Os.27169.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68740Os.56048.1.S1_s_at11/111+40252434..40254109expressed protein
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25007.3.S1_x_at--909--8971Chr01:40268242..40268266 (25 bp)
TGAACACCATGCAACATCAAGCTCC
LOC_Os01g68760
Os.25007.3.S1_x_at--139--571Chr01:40268214..40268238 (25 bp)
ATCCTCGTCCTTGCCAGAGAATTGG
LOC_Os01g68760
Os.25007.3.S1_x_at--1060--3231Chr01:40267795..40267819 (25 bp)
CAAGCAACACAGTGGGAGCCGCCTA
LOC_Os01g68760
Os.25007.3.S1_x_at--104--8691Chr01:40267766..40267790 (25 bp)
TGTGAACCCAGGTGTTGCGCCTCAT
LOC_Os01g68760
Os.25007.3.S1_x_at--252--9331Chr01:40267739..40267763 (25 bp)
TCCCACCAATGCTGCTGTTGAGATG
LOC_Os01g68760
Os.25007.3.S1_x_at--375--5191Chr01:40267325..40267644 (25 bp)
GCAATCACTGCACAAGGGTTCAAAA
LOC_Os01g68760
Os.25007.3.S1_x_at--1027--10651Chr01:40267298..40267322 (25 bp)
TTCCTTTTCAACAGTATCCATCCTA
LOC_Os01g68760
Os.25007.3.S1_x_at--862--2031Chr01:40267065..40267088 (24 bp)
ACAGATCAAGCGCAAAACCTCCATT
LOC_Os01g68760
Os.25007.3.S1_x_at--1115--6291Chr01:40266994..40267018 (25 bp)
GATGATGAGCTTGACCCGATGGACC
LOC_Os01g68760
Os.25007.3.S1_x_at--173--831Chr01:40266976..40267000 (25 bp)
ATGGACCCAAGCTCTTACTCAGATG
LOC_Os01g68760
Os.25007.3.S1_x_at--672--7711Chr01:40266943..40266967 (25 bp)
GGTGGCTGGTACATGATCTTTTTCA
LOC_Os01g68760
Target Sequence 
TGAACACCATGCAACATCAAGCTCCTCCATCCTCGTCCTTGCCAGAGAATTGGGAGGAGGCACTTGATCAATCAACAGGC
CAGAAATACTATTACAATACAAATACACAAGCAACACAGTGGGAGCCGCCTACTGCTGTGAACCCAGGTGTTGCGCCTCA
TGCTCCCACCAATGCTGCTGTTGAGATGGCTGCTCAAAATACAGATATTTGGAACTCTCAAATGCAGAGATGTTTAGGCT
GTGGTGGATGGGGTGTAGGTCTTGTCCAGCCATGGGGTTATTGCAATCACTGCACAAGGGTTCAAAATCTTCCTTTTCAA
CAGTATCCATCCTACCCAAACAATACTACACACTCAAGCAGTAACAAAAATCCAGGGAATGTAGCAGCCAAGGACAGATC
AAGCGCAAAACCTCCATTTGGCAAAGCAAACAGAAAAGATCACCGCAAAAGAAATCGCCCTGAGGATGATGAGCTTGACC
CGATGGACCCAAGCTCTTACTCAGATGCTCCACGGGGTGGCTGGTACATGATCTTTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25007.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis