Browse Element(s) Details


Os.25097.1.S1_at

Description gb:AK099224.1
DB_XREF= gi:32984433
TID=Os.25097.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013091G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091G02, full insert sequence.
FL= gb:AK059405.1 gb:AK068133.1 gb:AK099224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0275011/11CDP-alcohol phosphatidyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02700Os.9153.1.S1_at11/112+1014016..1016213AMP-binding enzyme family protein, expressed
LOC_Os02g02710Os.24694.1.S1_at11/112+1017511..1021998zinc carboxypeptidase family protein, putative, expressed
LOC_Os02g02720Os.12213.1.S1_at11/112+1022080..1024751Syntaxin 51, putative, expressed
LOC_Os02g02730OsAffx.11867.1.S1_x_at11/112+1029925..1034242expressed protein
LOC_Os02g02730Os.55372.1.S1_x_at1/112+1029925..1034242expressed protein
LOC_Os02g02740Os.25440.1.S1_x_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740OsAffx.11868.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02740Os.25440.1.S1_at11/112+1036857..1039710pentatricopeptide, putative, expressed
LOC_Os02g02750Os.25097.1.S1_at11/112+1040539..1045797CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os02g02770Os.52476.1.S1_at11/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02770Os.52476.1.S2_at10/112+1047595..1050120pentatricopeptide, putative, expressed
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008654biological_processphospholipid biosynthesis
GO:0030572molecular_functionphosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25097.1.S1_at--195--751Chr02:1044961..1045147 (25 bp)
ATGTACTGCTTATTTACCGTGGCTC
LOC_Os02g02750
Os.25097.1.S1_at--1126--7531Chr02:1045141..1045165 (25 bp)
GTGGCTCTCTACATGCATTTTGCTA
LOC_Os02g02750
Os.25097.1.S1_at--490--4951Chr02:1045155..1045179 (25 bp)
GCATTTTGCTACATCTGTTATCCAT
LOC_Os02g02750
Os.25097.1.S1_at--658--3071Chr02:1045182..1045206 (25 bp)
AATCACCAATGCTCTCGGGATTCAT
LOC_Os02g02750
Os.25097.1.S1_at--1075--7651Chr02:1045198..1045304 (25 bp)
GGGATTCATTGCTTCAGGATCACTA
LOC_Os02g02750
Os.25097.1.S1_at--700--7351Chr02:1045321..1045345 (25 bp)
GTGAACCATCCACAATTGCCTTGCT
LOC_Os02g02750
Os.25097.1.S1_at--719--9191Chr02:1045337..1045361 (25 bp)
TGCCTTGCTCTGGTTGGCAATCATA
LOC_Os02g02750
Os.25097.1.S1_at--497--231Chr02:1045428..1045452 (25 bp)
ATATTTGCATTTGTTATTCCCAGGA
LOC_Os02g02750
Os.25097.1.S1_at--1153--6851Chr02:1045531..1045555 (25 bp)
GTTTGTTGTATCACCTAGAACTTCA
LOC_Os02g02750
Os.25097.1.S1_at--446--2051Chr02:1045550..1045574 (25 bp)
ACTTCAATTCAGTGATGCTCGGCAA
LOC_Os02g02750
Os.25097.1.S1_at--592--10271Chr02:1045631..1045655 (25 bp)
TTTACATTGTAGCATCACCTGAGAT
LOC_Os02g02750
Target Sequence 
ATGTACTGCTTATTTACCGTGGCTCTCTACATGCATTTTGCTACATCTGTTATCCATGAAATCACCAATGCTCTCGGGAT
TCATTGCTTCAGGATCACTAGGAAAAAGGCATAATTGTGAACCATCCACAATTGCCTTGCTCTGGTTGGCAATCATATGT
TATATTTGCGCAAAAAGGCAAATATTTTCAATTATTCTTCATGAAGATTCTGCTCTTCAGATCATATTTGCATTTGTTAT
TCCCAGGATTGCTATTATCCGAGATTGAAATTATCATCAGAACTTGTGCTGATAAGGAAACGACGTCCTTGGAAGAGTTG
GATTTTGTTTGTTGTATCACCTAGAACTTCAATTCAGTGATGCTCGGCAAAACTTTTTTTTTGGGGGTACATGTTGAGCA
GATTGGCAGATGATACATTTGTAATTTTTACATTGTAGCATCACCTGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis