Browse Element(s) Details


Os.25167.2.S1_at

Description gb:AK070796.1
DB_XREF= gi:32980819
TID=Os.25167.2
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25167 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative F-box protein family (OSJNAa0011L09.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full insert sequence.
FL= gb:AK070796.1 gb:AK072011.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g256809/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed
LOC_Os10g25690OsAffx.6764.1.S1_at11/1110+12973972..12976326hypothetical protein
LOC_Os10g25690Os.51366.1.S1_at2/1110+12973972..12976326hypothetical protein
LOC_Os10g25690OsAffx.31141.1.A1_at1/1110+12973972..12976326hypothetical protein
LOC_Os10g25710Os.27691.2.S1_x_at3/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25710Os.27691.1.S1_x_at2/1110+12985100..12986283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25720NANA10+12987118..12990891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25730OsAffx.29207.2.S1_at10/1110+12995795..12996854hypothetical protein
LOC_Os10g25730OsAffx.29207.1.S1_x_at6/1110+12995795..12996854hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25167.2.S1_at--113--4351Chr10:12963280..12963304 (25 bp)
CCATGGACGCGGGTGATTCTAGCTT
LOC_Os10g25680
Os.25167.2.S1_at--477--2331Chr10:12963234..12963258 (25 bp)
AAAGAAGCCCTTCATGGCACTCTTG
LOC_Os10g25680
Os.25167.2.S1_at--555--8751Chr10:12963211..12963235 (25 bp)
TGTACATACTAGTGGCGGCAGCATC
LOC_Os10g25680
Os.25167.2.S1_at--1001--3931Chr10:12963196..12963220 (25 bp)
CGGCAGCATCACCATTATATTTAAT
LOC_Os10g25680
Os.25167.2.S1_at--910--10571Chr10:12963132..12963156 (25 bp)
TTCTCAGTTGATTCTCGTGCGGTAA
LOC_Os10g25680
Os.25167.2.S1_at--565--2591Chr10:12963087..12963111 (25 bp)
AATCCTGGTGGGTGTTCGAACTTGT
LOC_Os10g25680
Os.25167.2.S1_at--28--5891Chr10:12963016..12963040 (25 bp)
GAGCGATCAGATCTGTATTCCGGTT
LOC_Os10g25680
Os.25167.2.S1_at--789--6871Chr10:12963002..12963026 (25 bp)
GTATTCCGGTTTACATATGCGTTAA
LOC_Os10g25680
Os.25167.2.S1_at--326--3071Chr10:12962976..12963000 (25 bp)
AATCATCTTGGTTGGATCTGAACTA
LOC_Os10g25680
Os.25167.2.S1_at--430--9111NONE
TGCTGCTAAAACGAACTTGCTTGAA
NONE
Os.25167.2.S1_at--1065--5431NONE
GAACGGCCTTCCCATTATTAAACAT
NONE
Target Sequence 
CCATGGACGCGGGTGATTCTAGCTTAGATTCAGAAACAACAACAAAAAAGAAGCCCTTCATGGCACTCTTGTACATACTA
GTGGCGGCAGCATCACCATTATATTTAATGGCAACGTATATTAGGAGCCAGGGGGTGACGCGAGCCGCTTCTCAGTTGAT
TCTCGTGCGGTAATAAGTAGTACCATCTAGCTGAATCCTGGTGGGTGTTCGAACTTGTAATTGTTTCTGTTTCCTTTTCT
TNCCTCCTGTATTCCGCTCCTATGGAGCGATCAGATCTGTATTCCGGTTTACATATGCGTTAATAATCATCTTGGTTGGA
TCTGAACTAAAAAAANNNAANNNNNNANNAAANANNANAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGGGCCCA
GGAAAGCCAACAAGGCCAAAAATTGATGATGCTGCTAAAACGAACTTGCTTGAAAAAAAAACTTGGTAAAAAAAAAAAAA
CGCTAAAAAAACAAATACTTTCTACCAAAAAGCGTTTTCACCCAGGTGGCCGTTGAAAAAAGAGGGCAAAACCGAACGGC
CTTCCCATTATTAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25167.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis