Browse Element(s) Details


Os.253.1.S1_at

Description gb:AK111585.1
DB_XREF= gi:37988248
TID=Os.253.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013089H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013089H02, full insert sequence.
FL= gb:AK111585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5287010/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.253.1.S1_at--16--5331Chr04:31266639..31266663 (25 bp)
GAAGTACCTTTGCTGATCCCAATTA
LOC_Os04g52870
Os.253.1.S1_at--178--531Chr04:31266624..31266648 (25 bp)
ATCCCAATTAGGCTTGCTGTGTAGG
LOC_Os04g52870
Os.253.1.S1_at--594--2892Chr10:7204907..7204926 (20 bp)
AAGGTTACCAATGCAGTGTAGCCAT
NONE
Os.253.1.S1_at--1154--7431Chr04:31266552..31266576 (25 bp)
GTGTAGCCATGCATGAAATCCGCAT
LOC_Os04g52870
Os.253.1.S1_at--763--2691Chr04:31266487..31266511 (25 bp)
AAGCTCTCATTGTCTTACTGTTTTG
LOC_Os04g52870
Os.253.1.S1_at--209--9931Chr04:31266472..31266496 (25 bp)
TACTGTTTTGAGCTCTAGTTGCATT
LOC_Os04g52870
Os.253.1.S1_at--968--10831Chr04:31266448..31266472 (25 bp)
TTGGGTTTTGTTCGTATCTTTCTGC
LOC_Os04g52870
Os.253.1.S1_at--1112--6891Chr04:31266435..31266459 (25 bp)
GTATCTTTCTGCTGGTAGCTGTTAT
LOC_Os04g52870
Os.253.1.S1_at--1079--3131Chr04:31266364..31266388 (25 bp)
AATTATGTCACTGCTGGATTCTTAG
LOC_Os04g52870
Os.253.1.S1_at--903--9111Chr04:31266328..31266352 (25 bp)
TGCTGTTACGTGGTCTGCAATAAGA
LOC_Os04g52870
Os.253.1.S1_at--886--351Chr04:31266309..31266333 (25 bp)
ATAAGAAAATCCTGCATTCCGACTC
NONE
Target Sequence 
GAAGTACCTTTGCTGATCCCAATTAGGCTTGCTGTGTAGGTTAACATTGGCATTTTCACTATTGAATTTTATAAGGTTAC
CAATGCAGTGTAGCCATGCATGAAATCCGCATATNCAATTCTTATTCGATATGGCATATATTGATCTAACAGAAGCTCTC
ATTGTCTTACTGTTTTGAGCTCTAGTTGCATTTGGGTTTTGTTCGTATCTTTCTGCTGGTAGCTGTTATGAATGGGAATC
TACATTGAACTATTCCAGGAATAATAAGCTTCTGTAATTATGTCACTGCTGGATTCTTAGAACATTACTTTTGCTGTTAC
GTGGTCTGCAATAAGAAAATCCTGCATTCCGACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis