Browse Element(s) Details


Os.2534.1.S1_at

Description gb:C97936
DB_XREF= gi:3760682
DB_XREF=C97936
CLONE=C0158_12Z
TID=Os.2534.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0051D19.20), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3500011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35030Os.7861.2.S1_s_at11/1110+18358228..18363727IAP100, putative, expressed
LOC_Os10g35030Os.51767.1.S1_at2/1110+18358228..18363727IAP100, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2534.1.S1_at--427--8531Chr10:18338892..18338916 (25 bp)
TGGAGCCTGTAGAAAGTCGTGTGAA
LOC_Os10g35000
Os.2534.1.S1_at--601--9811Chr10:18338920..18338944 (25 bp)
TAACAAGCGTGGTTTGGGTTCCAAG
LOC_Os10g35000
Os.2534.1.S1_at--839--2371Chr10:18338996..18339416 (25 bp)
AAACCCAAGCTGGAAGCACCGAAGA
LOC_Os10g35000
Os.2534.1.S1_at--1080--5551Chr10:18339491..18339515 (25 bp)
GAAATGGCTTTCTTCAGGGAATTTT
LOC_Os10g35000
Os.2534.1.S1_at--376--151Chr10:18339511..18339535 (25 bp)
ATTTTGGCCCGATAATGTGTAGAAC
LOC_Os10g35000
Os.2534.1.S1_at--276--2391Chr10:18339533..18339557 (25 bp)
AACAGGAGGTTAACCTTGCTGGGCG
LOC_Os10g35000
Os.2534.1.S1_at--953--8351Chr10:18339554..18339578 (25 bp)
GGCGGTTCGACCTGCTGGCTTCAGC
LOC_Os10g35000
Os.2534.1.S1_at--1010--8471Chr10:18339569..18339593 (25 bp)
TGGCTTCAGCTTATTAGGCTCCCTT
LOC_Os10g35000
Os.2534.1.S1_at--580--10091Chr10:18339583..18339607 (25 bp)
TAGGCTCCCTTGTACAGAACAACAG
LOC_Os10g35000
Os.2534.1.S1_at--633--1431Chr10:18339598..18339622 (25 bp)
AGAACAACAGCTTTGACTCCCTTGT
LOC_Os10g35000
Os.2534.1.S1_at--500--5711Chr10:18339612..18339636 (25 bp)
GACTCCCTTGTTGTATGTGGCTAAA
LOC_Os10g35000
Target Sequence 
TGGAGCCTGTAGAAAGTCGTGTGAAGAATAACAAGCGTGGTTTGGGTTCCAAGGAACCAAAGCTAAAGCCAAAGGTTGAC
GAGGATGGTGAAAAAGACCCTAAAAAACCCAAGCTGGAAGCACCGAAGAAGAAGGCCAAGTTGGCCGCGAAGAGGATACG
GAAGATGCAAGAAGAAGAGAAGCGGTTACAAGAGAGGGAATTTGAAATGGCTTTCTTCAGGGAATTTTGGCCCGATAATG
TGTAGAACAGGAGGTTAACCTTGCTGGGCGGTTCGACCTGCTGGCTTCAGCTTATTAGGCTCCCTTGTACAGAACAACAG
CTTTGACTCCCTTGTTGTATGTGGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis