Browse Element(s) Details


Os.25471.1.S1_x_at

Description gb:AK071681.1
DB_XREF= gi:32981704
TID=Os.25471.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.19 (P0681B11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109M08, full insert sequence.
FL= gb:AK071681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4201010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41960OsAffx.797.1.S1_at11/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_s_at9/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.1.S1_at6/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41960OsAffx.25007.2.S1_at3/111+24114808..24123820retrotransposon protein, putative, unclassified
LOC_Os01g41970OsAffx.21389.2.S1_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41970OsAffx.21389.1.S1_s_at11/111+24128122..24128834hypothetical protein
LOC_Os01g41980OsAffx.2212.3.A1_at11/111+24132972..24135701hypothetical protein
LOC_Os01g41980Os.32118.2.S1_x_at1/111+24132972..24135701hypothetical protein
LOC_Os01g41990Os.6024.1.S1_at10/111+24136996..24138405EF hand family protein, expressed
LOC_Os01g42000NANA1+24140040..24141457expressed protein
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25471.1.S1_x_at--279--1031Chr01:24142246..24142270 (25 bp)
AGGTCCAGAGCTTTTCCGTTACAAT
LOC_Os01g42010
Os.25471.1.S1_x_at--622--3411Chr01:24142205..24142229 (25 bp)
CAGCACGTCACTTGCATTCTATTGT
LOC_Os01g42010
Os.25471.1.S1_x_at--913--10511Chr01:24142163..24142187 (25 bp)
TTCACTTGCGTAGCGTTCTATTGTT
LOC_Os01g42010
Os.25471.1.S1_x_at--448--2431Chr01:24142010..24142034 (25 bp)
AAAAGCGGCATTTTCCTTGATCCAT
LOC_Os01g42010
Os.25471.1.S1_x_at--550--9611Chr01:24141962..24141986 (25 bp)
TCATCGGTGACGTGGAGCTCTTCAA
LOC_Os01g42010
Os.25471.1.S1_x_at--381--7411Chr01:24141926..24141950 (25 bp)
GTGATTTCTCATTATCCTGCAACTA
LOC_Os01g42010
Os.25471.1.S1_x_at--414--2391Chr01:24141885..24141909 (25 bp)
AAACTGTTATCTTAGCTGCTTTCCA
LOC_Os01g42010
Os.25471.1.S1_x_at--1057--10351Chr01:24141765..24141789 (25 bp)
TTTTAGGATATATGCTCCCCTGCTC
LOC_Os01g42010
Os.25471.1.S1_x_at--1044--9191Chr01:24141737..24141761 (25 bp)
TGCCATGCTGCAACTCAAAATGTGT
LOC_Os01g42010
Os.25471.1.S1_x_at--518--5171Chr01:24141701..24141725 (25 bp)
GCAAGCTTAGACTTCCCACATTAAT
LOC_Os01g42010
Os.25471.1.S1_x_at--944--9471Chr01:24141670..24141694 (25 bp)
TCTGAGAGGTCTTTACCTGTGTGCC
NONE
Target Sequence 
AGGTCCAGAGCTTTTCCGTTACAATTTCGTTAGAAGATANTCAGCACGTCACTTGCATTCTATTGTTATGCNCAGCCGTA
TTNTTCACTTGCGTAGCGTTCTATTGTTATGCACAGNTGTATTNTCATTTCAGCCATAGTGCCAGATAAGTTTCTGCAAG
CTATATATAGNTCTTGAATGCATTAACGGAATTACTGAGGACAGACGTTATNNNNAANAACAGAACGGTAANCAACAAAA
GCGGCATTTTCCTTGATCCATTTTTNAATTTTCNATTAATTATATCATCGGTGACGTGGAGCTCTTCAACAGTTGCACTT
GTGATTTCTCATTATCCTGCAACTATGGTAGTACTTGTTATAAACTGTTATCTTAGCTGCTTTCCAGCTGGGCATCTTTT
GTAAGCACGAAAATGGGACTTGGGAATTGAGAGCATTGGTGGTACTTATTTGATGGCATTCGTTTAGACACAGTAATTTT
ATTTTAGGATATATGCTCCCCTGCTCCTTTGCCATGCTGCAACTCAAAATGTGTAGCAATGTAAAGCAAGCTTAGACTTC
CCACATTAATGAACAATCTGAGAGGTCTTTACCTGTGTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25471.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis