Browse Element(s) Details


Os.26206.1.S1_at

Description gb:AK104821.1
DB_XREF= gi:32990030
TID=Os.26206.1
CNT=83
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.26206 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glyoxysomal malate dehydrogenase (OSJNBb0094O03.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-B02, full insert sequence.
FL= gb:AK067105.1 gb:AK104821.1 gb:AK064972.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5628011/11Malate dehydrogenase, glyoxysomal precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g56260Os.25316.1.S1_at11/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56260Os.25316.2.S1_x_at10/113+32003192..32010045Kinesin motor domain containing protein, expressed
LOC_Os03g56270Os.6210.1.S1_at11/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56270OsAffx.2349.1.S1_at1/113+32017589..32021481Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g56280Os.26206.1.S1_at11/113+32024964..32028618Malate dehydrogenase, glyoxysomal precursor, putative, expressed
LOC_Os03g56290NANA3+32029474..32030349hypothetical protein
LOC_Os03g56300Os.11902.1.S1_at10/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56300OsAffx.27834.1.S1_at1/113+32031345..32034560NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os03g56310Os.5651.1.S1_a_at11/113+32035791..32042937HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os03g56320Os.19413.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56320Os.56243.1.S1_at11/113+32045979..32049346expressed protein
LOC_Os03g56330Os.11226.1.S1_at11/113+32052198..32052801expressed protein
LOC_Os03g56340OsAffx.25733.1.S1_at11/113+32053048..32054068hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26206.1.S1_at--1109--9111Chr03:32026580..32026604 (25 bp)
TGCTGGAGTGACTATATTACCCCTC
LOC_Os03g56280
Os.26206.1.S1_at--117--4831Chr03:32026433..32026457 (25 bp)
GCTCATTTACCCCAGATGAAATCAG
LOC_Os03g56280
Os.26206.1.S1_at--561--391Chr03:32026413..32026437 (25 bp)
ATCAGCTATTTGACTAAACGCATAC
LOC_Os03g56280
Os.26206.1.S1_at--395--2531Chr03:32025625..32025724 (25 bp)
AACTTTGTCAATGGCTTTTGCTGCA
LOC_Os03g56280
Os.26206.1.S1_at--1045--8851Chr03:32025589..32025613 (25 bp)
TGATGCATGCTTGCGAGCAATGCGT
LOC_Os03g56280
Os.26206.1.S1_at--1015--6331Chr03:32025561..32025585 (25 bp)
GATGCTGGCGTTGTGGAATGTTCAT
LOC_Os03g56280
Os.26206.1.S1_at--763--7651Chr03:32025440..32025464 (25 bp)
GGTGACCGAGTTGCCGTTCTTTGCA
LOC_Os03g56280
Os.26206.1.S1_at--950--5311Chr03:32025191..32025215 (25 bp)
GAAGGGCATCGATTTCATGAACAAG
LOC_Os03g56280
Os.26206.1.S1_at--503--2111Chr03:32025101..32025125 (25 bp)
ACATGTAAAATTTTCGCCGGGCTCA
LOC_Os03g56280
Os.26206.1.S1_at--1150--10371Chr03:32025091..32025115 (25 bp)
TTTTCGCCGGGCTCATATACATGTA
LOC_Os03g56280
Os.26206.1.S1_at--478--5811Chr03:32025048..32025072 (25 bp)
GACCGTGAAATGCTAATTACCCTTT
LOC_Os03g56280
Target Sequence 
TGCTGGAGTGACTATATTACCCCTCCTCTCCCAGGTCCACCCCCCATGCTCATTTACCCCAGATGAAATCAGCTATTTGA
CTAAACGCATACAGAATGGTGGCACAGAAGTTGTTGAGGCAAAGGCAGGAGCAGGCTCTGCAACTTTGTCAATGGCTTTT
GCTGCAGCAAAATTTGGTGATGCATGCTTGCGAGCAATGCGTGGTGATGCTGGCGTTGTGGAATGTTCATATGTTGCATC
TGCGGTGACCGAGTTGCCGTTCTTTGCAACAAAAGTGAGGTTAGGTCGTGCTGGAGCCGAAGAGGTTCTCCCTCTNGGGC
CGTTGAATGATTTTGAGAGAGCTGGCTTGGAGATGGCAAAGAAAGAGCTGATGGAGAGCATTCAGAAGGGCATCGATTTC
ATGAACAAGTGAGGTGTATGAAGGGACAAAGTTATGCATACATGTAAAGAGTGTCCTATATATAGTGCTCATATACATGT
AAAATTTTCGCCGGGCTCATATACATGTAAAATCACTTCTGTAAAACGACCGTGAAATGCTAATTACCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis