Browse Element(s) Details


Os.26433.1.S1_at

Description gb:CB637468
DB_XREF= gi:29632459
DB_XREF=OSJNEa04C20.r
CLONE=OSJNEa04C20
TID=Os.26433.1
CNT=14
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.26433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413C03.11 (P0413C03.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6881010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68750Os.18887.1.S2_at11/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68750Os.18887.1.S1_at9/111+40258122..40265005Adaptin N terminal region family protein, expressed
LOC_Os01g68760Os.25007.1.S1_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.1.S2_a_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68760Os.25007.3.S1_x_at11/111+40265602..40271728WW domain containing protein, expressed
LOC_Os01g68770Os.8353.1.S1_at11/111+40274921..40278368Selenium-binding protein, putative, expressed
LOC_Os01g68780NANA1+40280629..40281060hypothetical protein
LOC_Os01g68790Os.2685.1.S1_at9/111+40281378..40283363Glycine-rich RNA-binding protein 2, mitochondrial precursor, putative, expressed
LOC_Os01g68800OsAffx.23976.1.S1_at11/111+40285429..40286332expressed protein
LOC_Os01g68810Os.26433.1.S1_at10/111+40287152..40302766expressed protein
LOC_Os01g68820Os.31501.1.S1_s_at11/111+40312072..40313344expressed protein
LOC_Os01g68830Os.42759.1.S1_at11/111+40319029..40321959expressed protein
LOC_Os01g68830Os.4958.1.A1_at10/111+40319029..40321959expressed protein
LOC_Os01g68840OsAffx.21847.1.S1_s_at11/111+40324972..40325940expressed protein
LOC_Os01g68850OsAffx.9656.3.S1_x_at11/111+40326245..40327940hypothetical protein
LOC_Os01g68850OsAffx.9656.1.S1_x_at2/111+40326245..40327940hypothetical protein
LOC_Os01g68850Os.57362.1.S1_at1/111+40326245..40327940hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26433.1.S1_at--724--491Chr01:40288933..40288957 (25 bp)
ATCGGATATCCCATGCTGATGACCT
LOC_Os01g68810
Os.26433.1.S1_at--485--4751Chr01:40288919..40288943 (25 bp)
GCTGATGACCTTCCTAGAATACATG
LOC_Os01g68810
Os.26433.1.S1_at--228--6031NONE
GAGAGGCTGACCAAGTACATGAGAG
NONE
Os.26433.1.S1_at--134--3231Chr01:40287563..40287587 (25 bp)
CAAGTCATGAATTCTCCTGAGCTTT
LOC_Os01g68810
Os.26433.1.S1_at--1089--10511Chr01:40287498..40287522 (25 bp)
TTCATCGTATTAACAGGCCATTCAG
LOC_Os01g68810
Os.26433.1.S1_at--913--6151Chr01:40287474..40287498 (25 bp)
GAGGTACATGCTGCACCAGAATTTT
LOC_Os01g68810
Os.26433.1.S1_at--472--9051Chr01:40287428..40287452 (25 bp)
TGCAGTTTGGTCCTATCGCGTAACA
LOC_Os01g68810
Os.26433.1.S1_at--529--5031Chr01:40287333..40287357 (25 bp)
GCAGAGTACAGACTTAATGGCCTAA
LOC_Os01g68810
Os.26433.1.S1_at--889--871Chr01:40287317..40287341 (25 bp)
ATGGCCTAACCTTTGATCTTGTGAT
LOC_Os01g68810
Os.26433.1.S1_at--159--8811Chr01:40287276..40287300 (25 bp)
TGTTCGCCGTCCAGCTATTTTGTAA
LOC_Os01g68810
Os.26433.1.S1_at--981--151Chr01:40287260..40287284 (25 bp)
ATTTTGTAACTCTACTAACCGCAGA
LOC_Os01g68810
Target Sequence 
ATCGGATATCCCATGCTGATGACCTTCCTAGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAA
GTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAAAGGAAGCACCGGAAGTAGGATAATTGTTG
GAATTTTGTTAGATGCAAAACAAGTCATGAATTCTCCTGAGCTTTACAAAGAAGCACATGATCAGCAATGTACAACATCA
CATATTTCATCGTATTAACAGGCCATTCAGAGGTACATGCTGCACCAGAATTTTTAGAAATACCTTGATTGAAGGTGCAG
TTTGGTCCTATCGCGTAACACGAACAGAAGTTGTGGATACATGACATTTGTTTAACTCTTATGTATTCTGTTGNTTGAAC
NAATTTGGAATGCAGAGTACAGACTTAATGGCCTAACCTTTGATCTTGTGATGTAAACTTGGATGAGCTGTTCGCCGTCC
AGCTATTTTGTAACTCTACTAACCGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis