Browse Element(s) Details


Os.26445.1.A1_at

Description gb:CB627086
DB_XREF= gi:29622075
DB_XREF=OSIIEb01M12.r
CLONE=OSIIEb01M12
TID=Os.26445.1
CNT=7
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.26445 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567360.1 (A.thaliana) subtilisin-like serine protease (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g031003/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03060OsAffx.13633.1.S1_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_s_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03080OsAffx.25853.3.S1_at10/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29410.1.S1_at8/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.13325.1.S1_at2/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29576.5.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_x_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03100Os.26445.2.S1_at4/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100Os.26445.1.A1_at3/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100OsAffx.18867.1.S1_at1/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03110NANA4+1277545..1281879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03120NANA4+1282719..1287616retrotransposon protein, putative, unclassified
LOC_Os04g03130OsAffx.13636.1.S1_at11/114+1289041..1291113hypothetical protein
LOC_Os04g03140OsAffx.25849.1.S1_at11/114+1293423..1293926hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26445.1.A1_at--917--6371Chr04:1271603..1271627 (25 bp)
GATCCGTGATTGACTTGAACCTGCC
LOC_Os04g03100
Os.26445.1.A1_at--1141--10731NONE
TTGAACCTGCCATCGATTGCTATTC
NONE
Os.26445.1.A1_at--100--6591NONE
GATTGCTATTCCCAACCTTAGGACA
NONE
Os.26445.1.A1_at--49--2611NONE
AACCTTAGGACATCACAAACTGCGG
NONE
Os.26445.1.A1_at--370--9131Chr04:1271664..1271688 (25 bp)
TGCGGTGCGCACTGTCACTAACGTT
LOC_Os04g03100
Os.26445.1.A1_at--713--7791NONE
GGTCGTGTACAAAGCTTTCCTTGAG
NONE
Os.26445.1.A1_at--3--10771NONE
TTGAGCCTCCTGCAGGAATCAAGAT
NONE
Os.26445.1.A1_at--834--4491NONE
GCCGTCGAGCCATCAGAGTTGGTGT
NONE
Os.26445.1.A1_at--133--2891Chr04:1271803..1271827 (25 bp)
AAGGTGACCTTCAAGGCGACACGGA
LOC_Os04g03100
Os.26445.1.A1_at--456--6051NONE
GAGATATACTCCAATATTTCCTGAT
NONE
Os.26445.1.A1_at--456--9271NONE
TCCTGATTTCACATGCTAGCTTCAT
NONE
Target Sequence 
GATCCGTGATTGACTTGAACCTGCCATCGATTGCTATTCCCAACCTTAGGACATCACAAACTGCGGTGCGCACTGTCACT
AACGTTGGTGACCAGCAAGAGGTCGTGTACAAAGCTTTCCTTGAGCCTCCTGCAGGAATCAAGATGGCCGTCGAGCCATC
AGAGTTGGTGTTCAGCAAGGACAAGAAGGATCAAAGCTTCAAGGTGACCTTCAAGGCGACACGGAAGGTCCAGGGGGGNT
ACACGTTNGGAAGCTTGGCATGGCATGATGGTGGCAGCCACTGGGTTNGAATCCCCATCGCAGTTCGCATTGTGATTGAA
GAGATATACTCCAATATTTCCTGATTTCACATGCTAGCTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26445.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis