Browse Element(s) Details


Os.26445.2.S1_at

Description gb:CB630079
DB_XREF= gi:29625068
DB_XREF=OSIIEb06M22.r
CLONE=OSIIEb06M22
TID=Os.26445.2
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26445 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567360.1 (A.thaliana) subtilisin-like serine protease (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g031004/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03060OsAffx.13633.1.S1_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03060OsAffx.13633.1.S1_s_at11/114+1241248..1247378Subtilase family protein, expressed
LOC_Os04g03080OsAffx.25853.3.S1_at10/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29410.1.S1_at8/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.13325.1.S1_at2/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.29576.5.S1_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03080OsAffx.10155.1.S1_x_at1/114+1253208..1256989subtilase family protein, putative
LOC_Os04g03100Os.26445.2.S1_at4/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100Os.26445.1.A1_at3/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03100OsAffx.18867.1.S1_at1/114+1267038..1271946Subtilisin N-terminal Region family protein, expressed
LOC_Os04g03110NANA4+1277545..1281879retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03120NANA4+1282719..1287616retrotransposon protein, putative, unclassified
LOC_Os04g03130OsAffx.13636.1.S1_at11/114+1289041..1291113hypothetical protein
LOC_Os04g03140OsAffx.25849.1.S1_at11/114+1293423..1293926hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26445.2.S1_at--985--1011NONE
AGGTCCCTCATTTGGTACTAACAGT
NONE
Os.26445.2.S1_at--773--7731NONE
GGTGGTACGCCTACGATGTCCCAAA
NONE
Os.26445.2.S1_at--326--5631NONE
GACACAGAAGTGCTATCTCCCAGGG
NONE
Os.26445.2.S1_at--388--511Chr04:1268979..1269003 (25 bp)
ATCGTCCACAATGTTAGCCGTCTCG
LOC_Os04g03100
Os.26445.2.S1_at--1114--10111Chr04:1269055..1269079 (25 bp)
TATACAAGGCTTGTTGGGCCACACC
LOC_Os04g03100
Os.26445.2.S1_at--590--6571NONE
GTTGACGTTTTATCACTTTCCATTG
NONE
Os.26445.2.S1_at--346--9231NONE
TCCATTGGTGGTCCGCTTGAACAAA
NONE
Os.26445.2.S1_at--235--2971NONE
AATGGCATTGCTGTTGTGTACGCTG
NONE
Os.26445.2.S1_at--114--7731Chr04:1269263..1269287 (25 bp)
GGTGGAGAACTCATCCCCGTGGTTA
LOC_Os04g03100
Os.26445.2.S1_at--1140--8571Chr04:1269282..1269306 (25 bp)
TGGTTACTAACGGTGGCTGCAGCCA
LOC_Os04g03100
Os.26445.2.S1_at--380--831NONE
ATGGATCGGTCTTTTCCTGTAGTGA
NONE
Target Sequence 
AGGTCCCTCATTTGGTACTAACAGTTGCAACAGGAAGATCGTCGGTGCACGGTGGTACGCCTACGATGTCCCAAACGGCA
CGCTCGACACAGAAGTGCTATCTCCCAGGGATGTCCATGGGCATGGCACCCACACGGCCTCAACAGCCGGTGGCAACATC
GTCCACAATGTTAGCCGTCTCGGGCTAGCGGCTGGCACAGCACGCGGTGGCGCACCCCGTGCACGGTTAGCCATATACAA
GGCTTGTTGGGCCACACCCGACGGTCGCACTGGCTGTTCTGGTGCTAGCCTGTTGAAAGCTATGGACGATGCTATCCATG
ATGGTGTTGACGTTTTATCACTTTCCATTGGTGGTCCGCTTGAACAAATAGGCACACTGCATGTTGTTGCTAATGGCATT
GCTGTTGTGTACGCTGCTGGGAACGATGGACCCATCGCTCAGACGGTGGAGAACTCATCCCCGTGGTTACTAACGGTGGC
TGCAGCCACCATGGATCGGTCTTTTCCTGTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26445.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis