Browse Element(s) Details


Os.26547.1.S1_at

Description gb:AK099719.1
DB_XREF= gi:32984928
TID=Os.26547.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26547 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088B06, full insert sequence.
FL= gb:AK063944.1 gb:AK099719.1 gb:AK061851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0516011/11Extracellular signal-regulated kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005739cellular_componentmitochondrion
GO:0004707molecular_functionMAP kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26547.1.S1_at--234--3711Chr05:2495497..2495521 (25 bp)
CTAGTTATTACCACAGCATCAGCAT
LOC_Os05g05160
Os.26547.1.S1_at--372--4971Chr05:2495512..2495536 (25 bp)
GCATCAGCATGGGTTTATTGTTCTA
LOC_Os05g05160
Os.26547.1.S1_at--689--5191Chr05:2495623..2495647 (25 bp)
GAATTGTACTGCAAGCCCTAGTGGA
LOC_Os05g05160
Os.26547.1.S1_at--475--4171Chr05:2495638..2495662 (25 bp)
CCCTAGTGGATTAGGCTGCCTGTTT
LOC_Os05g05160
Os.26547.1.S1_at--965--291Chr05:2495675..2495699 (25 bp)
ATAGCTCAACCTCTGAATGATCTGG
LOC_Os05g05160
Os.26547.1.S1_at--145--2891Chr05:2495809..2495833 (25 bp)
AAGGGACTCTTTACTGACCTGACTG
LOC_Os05g05160
Os.26547.1.S1_at--586--5831Chr05:2495824..2495848 (25 bp)
GACCTGACTGATGCTGCTATTCAAT
LOC_Os05g05160
Os.26547.1.S1_at--437--71Chr05:2495902..2495926 (25 bp)
ATTGCTTTAGTATTTCGTTCTCAGG
LOC_Os05g05160
Os.26547.1.S1_at--1104--5471Chr05:2495926..2495950 (25 bp)
GAACATTGTTCCCTTTGCAGAGCTA
LOC_Os05g05160
Os.26547.1.S1_at--156--1371Chr05:2495944..2495968 (25 bp)
AGAGCTAGGAGCTGCAACTATGTAC
LOC_Os05g05160
Os.26547.1.S1_at--80--10731Chr05:2496004..2496028 (25 bp)
TTGCATTTCAAGTATTTTCCCTCCT
LOC_Os05g05160
Target Sequence 
CTAGTTATTACCACAGCATCAGCATGGGTTTATTGTTCTATGTAGTAAATTCTTAGACATTTAAAACATGTCATTCTGTA
CAGACTTGTATTGTTTCTTGGGGGCTTTTCCATGATAAAAACAGTAGAATTGTACTGCAAGCCCTAGTGGATTAGGCTGC
CTGTTTCTNCATTTCTTCATAGCTCAACCTCTGAATGATCTGGTACACAAACAAGATCTCATGGAATTGGACATCACATG
ATTCAGTTCGAAGGGGGTATAGTGGAAACTGGAAGCAACAAGTGGACTGTAACATTTTCTTGCTGAGAAAACAAGGGACT
CTTTACTGACCTGACTGATGCTGCTATTCAATTTATTTTCCAAGTAAATCCGAAGAAGGATCATGTAAACAGCACAATGT
TGGACATTGCTTTAGTATTTCGTTCTCAGGAACATTGTTCCCTTTGCAGAGCTAGGAGCTGCAACTATGTACTACTATCT
GACATTGCTGTAACTTGTAAAACTTAATTGCATTTCAAGTATTTTCCCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis