Browse Element(s) Details


Os.26655.1.S1_at

Description gb:AK099837.1
DB_XREF= gi:32985046
TID=Os.26655.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26655 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106L05, full insert sequence.
FL= gb:AK099837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2097011/11Phospholipid-transporting ATPase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20920OsAffx.12960.1.S1_at10/113+11848345..11849204hypothetical protein
LOC_Os03g20930OsAffx.8073.1.S1_at5/113+11850359..11855385retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20940OsAffx.25173.1.S1_at11/113+11857073..11860577QXW lectin repeat family protein
LOC_Os03g20949OsAffx.3286.1.S1_x_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20949Os.25243.1.A1_at11/113+11862629..11863722Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20958Os.57287.1.S1_at10/113+11864292..11867720Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.1.S1_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20970Os.26655.2.S1_x_at11/113+11871980..11877061Phospholipid-transporting ATPase 1, putative, expressed
LOC_Os03g20980Os.27533.1.S1_a_at11/113+11881656..11886194expressed protein
LOC_Os03g20990OsAffx.12961.1.S1_at11/113+11895521..11896299hypothetical protein
LOC_Os03g21000Os.5830.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed
LOC_Os03g21000OsAffx.12962.1.S1_at11/113+11898085..11900185Thioredoxin-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26655.1.S1_at--1140--3471Chr03:11872521..11872545 (25 bp)
CATGTGGGCCCGGACGTCCAAATTA
LOC_Os03g20970
Os.26655.1.S1_at--979--8291Chr03:11872478..11872502 (25 bp)
GGCTTATCCACAATTCCACATGTGC
LOC_Os03g20970
Os.26655.1.S1_at--520--9031Chr03:11872456..11872480 (25 bp)
TGCACCATGTAGACTTTGGGCCATC
LOC_Os03g20970
Os.26655.1.S1_at--768--9691Chr03:11872424..11872448 (25 bp)
TCACAGCCCCTTGCAGAAAGTCAAA
LOC_Os03g20970
Os.26655.1.S1_at--353--9971Chr03:11872339..11872363 (25 bp)
TAGCGCGCAACGTCATTGCACAAAT
LOC_Os03g20970
Os.26655.1.S1_at--733--7851Chr03:11872248..11872272 (25 bp)
GGTAGTACTAGCTCGTACTCTACAA
LOC_Os03g20970
Os.26655.1.S1_at--364--9911Chr03:11872233..11872257 (25 bp)
TACTCTACAATCGTACACCGCAGGA
LOC_Os03g20970
Os.26655.1.S1_at--232--5291Chr03:11872139..11872163 (25 bp)
GAATGGGTCAATCCAGCACGGCGAA
LOC_Os03g20970
Os.26655.1.S1_at--710--3371Chr03:11872098..11872122 (25 bp)
CAGCCACGCCACAGTTCTTGGAAAG
LOC_Os03g20970
Os.26655.1.S1_at--118--9891Chr03:11872012..11872036 (25 bp)
TACATACACACATGCTCTCATTGGC
LOC_Os03g20970
Os.26655.1.S1_at--322--31Chr03:11871993..11872017 (25 bp)
ATTGGCACACCAACAACACATGTCA
LOC_Os03g20970
Target Sequence 
CATGTGGGCCCGGACGTCCAAATTAAACACACAGAATTCATGTGGCTTATCCACAATTCCACATGTGCACCATGTAGACT
TTGGGCCATCCCATATCTCACAGCCCCTTGCAGAAAGTCAAAATACCGAGGATTTTCTACATCTTTTGTTTAATCTGAGA
GAAGATCTCGCCGGTGGTGGCCTAGCGCGCAACGTCATTGCACAAATCATACCACTGATAGCGCAGAGATTAACTAACCA
ATATTCTAAATGATTTACAANATCTCTGAAACTGGTAGTACTAGCTCGTACTCTACAATCGTACACCGCAGGAATCATAA
CCCTGGTACTATACTAGTACACGATTTAACTATAACAAGTTCTTAAAATAAAACGACATGCCGAATGGGTCAATCCAGCA
CGGCGAAGGACAGGCCCACGGGCCAGCCACGCCACAGTTCTTGGAAAGGACTCTTTACACGTCCAATTTATTGTTTCTCT
ATTTTCCATTTTTCCTTTTCCTTTTTATATACATACACACATGCTCTCATTGGCACACCAACAACACATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26655.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis