Browse Element(s) Details


Os.26692.1.S1_at

Description gb:AK110840.1
DB_XREF= gi:32996049
TID=Os.26692.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-B05, full insert sequence.
FL= gb:AK110840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3492011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34880Os.49843.1.S1_at10/115+20638308..20642853Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g34890OsAffx.27168.1.S1_at11/115+20643325..20644127hypothetical protein
LOC_Os05g34900Os.27470.1.S1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.3.A1_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34900Os.27470.2.S1_a_at11/115+20645078..20652306wound-responsive family protein, putative, expressed
LOC_Os05g34910Os.54914.1.S1_at1/115+20653165..20653807hypothetical protein
LOC_Os05g34920Os.26692.1.S1_at11/115+20665685..20669702expressed protein
LOC_Os05g34930OsAffx.27169.1.S1_at11/115+20671872..20672697hypothetical protein
LOC_Os05g34940Os.2214.1.S1_at11/115+20676260..20679476MADS-box transcription factor 4, putative, expressed
LOC_Os05g34950Os.20551.1.A1_at11/115+20678718..20680926Protein kinase domain containing protein, expressed
LOC_Os05g34960NANA5+20682980..20686125hypothetical protein
LOC_Os05g34970NANA5+20690333..20691413hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26692.1.S1_at--799--8931Chr05:20669127..20669151 (25 bp)
TGACCCGACGGCCATTGAGATTATC
LOC_Os05g34920
Os.26692.1.S1_at--934--6091Chr05:20669165..20669189 (25 bp)
GAGTCAGTCGGCATTTGTCTCCATT
LOC_Os05g34920
Os.26692.1.S1_at--334--9191Chr05:20669189..20669213 (25 bp)
TGCCAGGTCCCAGTTTGGAGCTGAA
LOC_Os05g34920
Os.26692.1.S1_at--841--691Chr05:20669219..20669243 (25 bp)
ATGAGCTTCCATTCCTCCAGTTGGT
LOC_Os05g34920
Os.26692.1.S1_at--518--1251Chr05:20669237..20669261 (25 bp)
AGTTGGTCTCTGTTGTGCGAACCCA
LOC_Os05g34920
Os.26692.1.S1_at--505--5111Chr05:20669295..20669319 (25 bp)
GCACTACCTGCCTGGTTGTAATTTT
LOC_Os05g34920
Os.26692.1.S1_at--90--10451Chr05:20669325..20669349 (25 bp)
TTACCTGTAAAACCCTCCTGAAATG
LOC_Os05g34920
Os.26692.1.S1_at--37--4431Chr05:20669349..20669373 (25 bp)
GCCAGTTTGGGTTTCAGAGATTGCA
LOC_Os05g34920
Os.26692.1.S1_at--820--5191Chr05:20669371..20669395 (25 bp)
GCAATCTTGAGTGGCCTGGTTTGGC
LOC_Os05g34920
Os.26692.1.S1_at--496--5111Chr05:20669402..20669426 (25 bp)
GCACTGCTACTCTCTGAACTGGTGT
LOC_Os05g34920
Os.26692.1.S1_at--62--3691Chr05:20669642..20669666 (25 bp)
CTTTGTATGTACGTGGCTGATTGCT
LOC_Os05g34920
Target Sequence 
TGACCCGACGGCCATTGAGATTATCCAAGACGGAGACTGAGTCAGTCGGCATTTGTCTCCATTGCCAGGTCCCAGTTTGG
AGCTGAAGGAACATGAGCTTCCATTCCTCCAGTTGGTCTCTGTTGTGCGAACCCACCTTTGCTTTCTGCTCAGCCCTGCG
ACTTCACTGCACTACCTGCCTGGTTGTAATTTTTTCTTTTACCTGTAAAACCCTCCTGAAATGCCAGTTTGGGTTTCAGA
GATTGCAATCTTGAGTGGCCTGGTTTGGCTGTGCTGCACTGCTACTCTCTGAACTGGTGTTGGGTTGGGATGGGCTNNGG
GAGTGGGGTGNAGTTGCGTGGGCAAAATTACGNTACAAACTTTATATATATATTTATATAAANANTATATGTATATAAAT
CTTATGCGCATACATATTTTGATGTATCATTTTTTTTATACATGCGCGTATAATCGTTTTGAGTATATGTATAAAATTTA
TATCCATATACATAAACTTTATATGTTACGTATAAACTTTGTATGTACGTGGCTGATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis