Browse Element(s) Details


Os.26832.1.S1_at

Description gb:CB620518
DB_XREF= gi:29615506
DB_XREF=OSIIEa05M18.r
CLONE=OSIIEa05M18
TID=Os.26832.1
CNT=26
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.26832 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568150.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1253010/11ABC1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12500Os.35344.18.S1_x_at10/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500Os.35344.3.S1_x_at9/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12500OsAffx.22940.5.S1_x_at3/117+7129728..7135775transposon protein, putative, Mutator sub-class
LOC_Os07g12510OsAffx.22431.1.S1_s_at11/117+7137873..7139079AP2 domain containing protein, expressed
LOC_Os07g12520Os.50233.1.S1_at11/117+7143853..7148040SWIM zinc finger family protein, putative, expressed
LOC_Os07g12530Os.26832.1.S1_at10/117+7151157..7156206ABC1 family protein, expressed
LOC_Os07g12540OsAffx.16228.1.S1_at11/117+7159169..7160548expressed protein
LOC_Os07g12550OsAffx.29680.1.S1_at8/117+7161453..7163595hypothetical protein
LOC_Os07g12560Os.29745.1.S2_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12560Os.29745.1.S1_at11/117+7163854..7166029F-box domain containing protein, expressed
LOC_Os07g12570Os.52501.1.S1_x_at10/117+7166700..7169696expressed protein
LOC_Os07g12580OsAffx.28419.1.S1_at11/117+7180720..7181108hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26832.1.S1_at--1081--8491Chr07:7152332..7152356 (25 bp)
TGGCATCAGCCCTTTCTGAAATGGG
LOC_Os07g12530
Os.26832.1.S1_at--355--2751Chr07:7151787..7151811 (25 bp)
AAGAACTCCTGATGCTACAGCAGTA
LOC_Os07g12530
Os.26832.1.S1_at--493--6891Chr07:7151765..7151789 (25 bp)
GTATCGGCTAATGTTGTCGTTGACG
LOC_Os07g12530
Os.26832.1.S1_at--455--31Chr07:7151728..7151748 (21 bp)
ATTGTTTCTTGATCTGGTGAGGGTC
LOC_Os07g12530
Os.26832.1.S1_at--1066--10431Chr07:7151502..7151526 (25 bp)
TTGAAATTTCCTCGCGAATTCGCTC
LOC_Os07g12530
Os.26832.1.S1_at--273--9331Chr07:7151491..7151515 (25 bp)
TCGCGAATTCGCTCTTCTGATGAAG
LOC_Os07g12530
Os.26832.1.S1_at--238--5071Chr07:7151467..7151491 (25 bp)
GCAGCTTCTGTATTTTGATCGCTAC
LOC_Os07g12530
Os.26832.1.S1_at--699--2811Chr07:7151440..7151464 (25 bp)
AAGATTGTTGGCTCCCAGCATGAAC
LOC_Os07g12530
Os.26832.1.S1_at--202--6131Chr07:7151401..7151425 (25 bp)
GAGGGTTAACATTAGCTCCCGCCAA
LOC_Os07g12530
Os.26832.1.S1_at--359--6131NONE
GAGTGGATCGTTTCCAGTGACCGAT
NONE
Os.26832.1.S1_at--53--9231Chr07:7151354..7151378 (25 bp)
TCCAGTGACCGATGCTTGTGATACA
LOC_Os07g12530
Target Sequence 
TGGCATCAGCCCTTTCTGAAATGGGTGCTACAGGGAATGATATAAATGTTAATGAATTTGCAAAGGACTTGGAAAAAATA
TTCTCATCAATACAGGATTTGGATACTGAAGTCATAGTTGCAACAGCAAGAACTCCTGATGCTACAGCAGTATCGGCTAA
TGTTGTCGTTGACGATAGACAGATGAATGCATTGTTTCTTGATCTGGTGAGGGTCAGCGAGTCGTATGGATTGAAATTTC
CTCGCGAATTCGCTCTTCTGATGAAGCAGCTTCTGTATTTTGATCGCTACACAAGATTGTTGGCTCCCAGCATGAACATG
CTGCGAGATGAGAGGGTTAACATTAGCTCCCGCCAACAGGCCAGAAGAGTGGATCGTTTCCAGTGACCGATGCTTGTGAT
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis