Browse Element(s) Details


Os.26862.3.S1_a_at

Description gb:CB638456
DB_XREF= gi:29633447
DB_XREF=OSJNEa06M10.f
CLONE=OSJNEa06M10
TID=Os.26862.3
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.26862 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564570.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0449011/11saccharopine dehydrogenase family protein, expressed
LOC_Os12g0426011/11saccharopine dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04450OsAffx.30814.1.S1_at11/1111+1856166..1856636hypothetical protein
LOC_Os11g04460OsAffx.18661.2.S1_x_at11/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04460OsAffx.18661.1.S1_at2/1111+1858363..1864172Calcium-transporting ATPase 4, plasma membrane-type, putative, expressed
LOC_Os11g04470OsAffx.18662.1.S1_at11/1111+1864568..1865996hypothetical protein
LOC_Os11g04470OsAffx.10096.1.S1_x_at1/1111+1864568..1865996hypothetical protein
LOC_Os11g04480Os.10842.2.S1_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04480Os.10842.1.S1_x_at9/1111+1867964..1871274EF hand family protein, expressed
LOC_Os11g04490Os.26862.3.S1_a_at11/1111+1878361..1880910saccharopine dehydrogenase family protein, expressed
LOC_Os11g04500Os.5332.1.S1_at9/1111+1882964..1886469Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os11g04510OsAffx.19484.1.S1_at11/1111+1890538..1891459hypothetical protein
LOC_Os11g04520Os.26409.3.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.1.S1_a_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04520Os.26409.2.S1_s_at11/1111+1893743..1897887TAP42-like family protein, expressed
LOC_Os11g04530OsAffx.31574.2.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.31574.1.S1_at8/1111+1898425..1901445Sulfotransferase domain containing protein
LOC_Os11g04530OsAffx.19485.1.S1_at1/1111+1898425..1901445Sulfotransferase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26862.3.S1_a_at--706--6072Chr12:1802336..1802360 (25 bp)
GAGTTTGTCCAAGTAGATATTCGCG
LOC_Os12g04260
Os.26862.3.S1_a_at--732--3212Chr12:1802345..1802369 (25 bp)
CAAGTAGATATTCGCGACAGGAACA
LOC_Os12g04260
Os.26862.3.S1_a_at--875--6532Chr12:1802540..1802564 (25 bp)
GATTTAGTTGTTCATGCTGCTGGAC
LOC_Os12g04260
Os.26862.3.S1_a_at--300--10292Chr12:1802566..1802590 (25 bp)
TTTCCAAAGGGAGAATGAGTGCACT
LOC_Os12g04260
Os.26862.3.S1_a_at--1066--692Chr12:1802580..1802604 (25 bp)
ATGAGTGCACTGTCCTACAGGCAGC
LOC_Os12g04260
Os.26862.3.S1_a_at--782--7252Chr12:1802591..1802615 (25 bp)
GTCCTACAGGCAGCAATAGCGACCA
LOC_Os12g04260
Os.26862.3.S1_a_at--1076--1392Chr12:1802738..1802762 (25 bp)
AGACTATTCGTGGAGAGCAAAGGGT
LOC_Os12g04260
Os.26862.3.S1_a_at--878--5132Chr12:1802754..1802778 (25 bp)
GCAAAGGGTTTCCATGAACAAGCAA
LOC_Os12g04260
Os.26862.3.S1_a_at--831--2812Chr12:1802779..1802803 (25 bp)
AAGATTGCGGTATCCCAGCTATTAC
LOC_Os12g04260
Os.26862.3.S1_a_at--863--3392Chr12:1802794..1802818 (25 bp)
CAGCTATTACAACTGCCGGCATCTA
LOC_Os12g04260
Os.26862.3.S1_a_at--55--3832Chr12:1802806..1802830 (25 bp)
CTGCCGGCATCTATCCTGGAGTGAG
LOC_Os12g04260
Target Sequence 
GAGTTTGTCCAAGTAGATATTCGCGACAGGAACATGNTGGAGGAAGTGCTACAGGATGTGGATTTAGTTGTTCATGCTGC
TGGACNTTTCCAAAGGGAGAATGAGTGCACTGTCCTACAGGCAGCAATAGCGACCAAGACGGCATATATTGATGTTTGTG
ATGATACAGACTATTCGTGGAGAGCAAAGGGTTTCCATGAACAAGCAAAAGATTGCGGTATCCCAGCTATTACAACTGCC
GGCATCTATCCTGGAGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26862.3.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis