Browse Element(s) Details


Os.27286.1.S1_at

Description gb:AK106088.1
DB_XREF= gi:32991297
TID=Os.27286.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.27286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B05, full insert sequence.
FL= gb:AK106088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4032010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40260Os.54774.1.S1_x_at2/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40260Os.54774.1.S1_at1/114+23725041..23728661retrotransposon, putative, centromere-specific
LOC_Os04g40270OsAffx.14215.1.S1_at11/114+23730035..23730310hypothetical protein
LOC_Os04g40279OsAffx.10250.3.S1_at4/114+23732589..23732974NA
LOC_Os04g40290Os.54640.1.S1_at6/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.56299.1.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40290Os.49200.2.S1_at1/114+23736457..23740570ATPase, AAA family protein
LOC_Os04g40300Os.49160.1.S1_at11/114+23740972..23744231transglutaminase, putative, expressed
LOC_Os04g40310Os.16333.1.S1_at11/114+23744901..23748682isocitrate dehydrogenase, NAD-dependent family protein, expressed
LOC_Os04g40320Os.27286.1.S1_at10/114+23749115..23753127expressed protein
LOC_Os04g40330OsAffx.14216.1.S1_x_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40330Os.9429.1.S1_at11/114+23756979..23760327F-box domain containing protein, expressed
LOC_Os04g40340Os.52304.1.S1_at8/114+23764935..23767303hypothetical protein
LOC_Os04g40350NANA4+23771794..23772611GRF zinc finger family protein
LOC_Os04g40360Os.14919.1.S1_at4/114+23773032..23778935transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27286.1.S1_at--905--3771Chr04:23752364..23752388 (25 bp)
CTCTGCGCTGACCTCCGAAATGGAG
LOC_Os04g40320
Os.27286.1.S1_at--634--10751Chr04:23752290..23752314 (25 bp)
TTGAGCGGACCAACGAACGCGTGCT
LOC_Os04g40320
Os.27286.1.S1_at--415--5451NONE
GAACGCGTGCTCGATCAGGAAAAAC
NONE
Os.27286.1.S1_at--925--951Chr04:23750308..23750332 (25 bp)
AGGACAGTGATTTGTTCTCAGCAAC
LOC_Os04g40320
Os.27286.1.S1_at--128--1691Chr04:23749335..23749359 (25 bp)
AGCCTTGAGTATAATCTCGAGCCGA
LOC_Os04g40320
Os.27286.1.S1_at--821--5371Chr04:23749312..23749336 (25 bp)
GAAGAAGCTGCTTTCAGGGCTGACA
LOC_Os04g40320
Os.27286.1.S1_at--220--1091Chr04:23749297..23749321 (25 bp)
AGGGCTGACAATCCTGTTCTCGCTC
LOC_Os04g40320
Os.27286.1.S1_at--221--10591Chr04:23749281..23749305 (25 bp)
TTCTCGCTCCTCGTTGTAAACAGAT
LOC_Os04g40320
Os.27286.1.S1_at--915--6211Chr04:23749199..23749223 (25 bp)
GAGGCGCACACGTTATCGTTTTTGA
LOC_Os04g40320
Os.27286.1.S1_at--1050--5331Chr04:23749155..23749179 (25 bp)
GAAGTATACTACACTCCTGTATTAT
LOC_Os04g40320
Os.27286.1.S1_at--703--431Chr04:23749132..23749156 (24 bp)
ATCTTTTGTGGCATTCAGCGAATCA
LOC_Os04g40320
Target Sequence 
CTCTGCGCTGACCTCCGAAATGGAGGAGATGTACAGTGGGATGCTAAGGAAGCTGGAGGGGCTTGCTCGGCAGGTTGAGC
GGACCAACGAACGCGTGCTCGATCAGGAAAAACAGAATACATTGCTCAGGAAAAAGGTTGCTGGATTGAAATAAGGACAG
TGATTTGTTCTCAGCAACAACAAGTGTGCATTGGTTATAAGAAAAGTTGGGAGCTATGAGCCTTGAGTATAATCTCGAGC
CGAAGAAGCTGCTTTCAGGGCTGACAATCCTGTTCTCGCTCCTCGTTGTAAACAGATTCGATGGTAGACACCAAGAAAGA
AATTGTGGAAACATTTGTGTAAATCTAAAAAGACGAGGCGCACACGTTATCGTTTTTGAAACTGCCATCTTAATGGCTGA
AGTATACTACACTCCTGTATTATCTTTTGTGGCATTCAGCGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis