Browse Element(s) Details


Os.27311.1.A1_at

Description gb:CB661084
DB_XREF= gi:29664809
DB_XREF=OSJNEd03I01.r
CLONE=OSJNEd03I01
TID=Os.27311.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27311 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4913011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49090Os.26580.1.A1_at10/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49090OsAffx.23696.1.S1_x_at1/112+30010129..30020066IMP dehydrogenase/GMP reductase domain containing protein, expressed
LOC_Os02g49100OsAffx.29218.1.S1_s_at8/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.55650.1.A1_at7/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.21756.5.A1_x_at4/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.7307.3.S1_x_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.52979.1.S1_at2/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.2057.3.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100Os.22646.1.S1_x_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49100OsAffx.13325.1.S1_at1/112+30020386..30024038retrotransposon protein, putative, unclassified
LOC_Os02g49110OsAffx.5954.4.S1_x_at7/112+30026085..30027236hypothetical protein
LOC_Os02g49120OsAffx.5954.1.S1_x_at6/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.5.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49120OsAffx.5954.3.S1_x_at3/112+30028827..30033963retrotransposon protein, putative, unclassified
LOC_Os02g49130Os.27311.1.A1_at11/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.12558.1.S1_at9/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.8676.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.3509.1.S1_at1/112+30038350..30041663expressed protein
LOC_Os02g49130OsAffx.22651.3.A1_x_at1/112+30038350..30041663expressed protein
LOC_Os02g49140Os.16235.1.S1_at10/112+30045802..30047497Glycosyltransferase 6, putative, expressed
LOC_Os02g49150Os.16748.1.S1_s_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49150OsAffx.12560.1.S1_x_at11/112+30047595..30052674RNA polymerase II 15.9 kDa subunit, putative, expressed
LOC_Os02g49160OsAffx.12561.1.S1_s_at11/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.55536.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49160Os.17655.1.S1_at10/112+30058614..30060286AUX/IAA family protein, expressed
LOC_Os02g49170OsAffx.24795.1.S1_at11/112+30060535..30061167hypothetical protein
LOC_Os02g49180NANA2+30061902..30065776RNA polymerase Rpb3/Rpb11 dimerisation domain containing protein
LOC_Os02g49190Os.18189.1.S1_at11/112+30066068..30069005SNF5/SMARCB1/INI1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27311.1.A1_at--869--10811Chr02:30038533..30038557 (25 bp)
TTGTCGTTTGGCTGAGTCTAGTGTC
LOC_Os02g49130
Os.27311.1.A1_at--218--8331Chr02:30038524..30038548 (25 bp)
GGCTGAGTCTAGTGTCACGACCTGA
LOC_Os02g49130
Os.27311.1.A1_at--964--7431Chr02:30038513..30038537 (25 bp)
GTGTCACGACCTGAATATTATTAAG
LOC_Os02g49130
Os.27311.1.A1_at--917--3131Chr02:30038457..30038481 (25 bp)
AATTATGATTGCTACCTCACTGGAC
LOC_Os02g49130
Os.27311.1.A1_at--75--6591Chr02:30038451..30038475 (25 bp)
GATTGCTACCTCACTGGACATTGAC
LOC_Os02g49130
Os.27311.1.A1_at--20--9971Chr02:30038445..30038469 (25 bp)
TACCTCACTGGACATTGACTCTATG
LOC_Os02g49130
Os.27311.1.A1_at--958--5671Chr02:30038435..30038459 (25 bp)
GACATTGACTCTATGTTGGAGTTCT
LOC_Os02g49130
Os.27311.1.A1_at--1101--10851Chr02:30038420..30038444 (25 bp)
TTGGAGTTCTGTAGCCAGTGGCGAA
LOC_Os02g49130
Os.27311.1.A1_at--663--9971Chr02:30038409..30038433 (25 bp)
TAGCCAGTGGCGAAGGAATAGGAAT
LOC_Os02g49130
Os.27311.1.A1_at--772--8191Chr02:30038389..30038413 (25 bp)
GGAATAGGAGTATCACACATTTAAC
LOC_Os02g49130
Os.27311.1.A1_at--630--6892Chr06:28508073..28508094 (22 bp)
GTATCACACATTTAACTATTCATTA
NONE
Target Sequence 
TTGTCGTTTGGCTGAGTCTAGTGTCACGACCTGAATATTATTAAGTCCAAGGTTATAAAAGAATTGTGAATTAATTAATT
ATGATTGCTACCTCACTGGACATTGACTCTATGTTGGAGTTCTGTAGCCAGTGGCGAAGGAATAGGAATAGGAGTATCAC
ACATTTAACTATTCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27311.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis